FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8317, 486 aa
  1>>>pF1KB8317 486 - 486 aa - 486 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2936+/-0.0009; mu= -6.2987+/- 0.055
 mean_var=349.3111+/-69.594, 0's: 0 Z-trim(117.2): 31  B-trim: 65 in 1/53
 Lambda= 0.068623
 statistics sampled from 17918 (17947) to 17918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.551), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS14741.1 MECP2 gene_id:4204|Hs108|chrX          ( 486) 3234 333.4 3.3e-91
CCDS48193.1 MECP2 gene_id:4204|Hs108|chrX          ( 498) 3177 327.8 1.7e-89


>>CCDS14741.1 MECP2 gene_id:4204|Hs108|chrX               (486 aa)
 initn: 3234 init1: 3234 opt: 3234  Z-score: 1751.0  bits: 333.4 E(32554): 3.3e-91
Smith-Waterman score: 3234; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486)

               10        20        30        40        50        60
pF1KB8 MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 APGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 APGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 PPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 GGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTP
              430       440       450       460       470       480

             
pF1KB8 VTERVS
       ::::::
CCDS14 VTERVS
             

>>CCDS48193.1 MECP2 gene_id:4204|Hs108|chrX               (498 aa)
 initn: 3177 init1: 3177 opt: 3177  Z-score: 1720.3  bits: 327.8 E(32554): 1.7e-89
Smith-Waterman score: 3177; 100.0% identity (100.0% similar) in 477 aa overlap (10-486:22-498)

                           10        20        30        40        
pF1KB8             MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQP
                            :::::::::::::::::::::::::::::::::::::::
CCDS48 MAAAAAAAPSGGGGGGEEERLEEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQP
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB8 SAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKL
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KB8 KQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRR
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KB8 EQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQT
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KB8 SPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAV
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KB8 KESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKE
              310       320       330       340       350       360

      350       360       370       380       390       400        
pF1KB8 SSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDL
              370       380       390       400       410       420

      410       420       430       440       450       460        
pF1KB8 SSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPR
              430       440       450       460       470       480

      470       480      
pF1KB8 PNREEPVDSRTPVTERVS
       ::::::::::::::::::
CCDS48 PNREEPVDSRTPVTERVS
              490        




486 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:41:29 2016 done: Fri Nov  4 11:41:30 2016
 Total Scan time:  3.520 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]