Result of FASTA (omim) for
pF1KB8281
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8281, 305 aa
1>>>pF1KB8281 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.1475+/-0.000394; mu= -12.2613+/- 0.025
mean_var=462.3125+/-93.410, 0's: 0 Z-trim(125.4): 61 B-trim: 0 in 0/61
Lambda= 0.059649
statistics sampled from 49070 (49193) to 49070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.577), width: 16
Scan time: 8.960
The best scores are: opt bits E(85289)
NP_001273554 (OMIM: 606447) RNA-binding protein wi ( 305) 2011 186.3 6.7e-47
NP_006702 (OMIM: 606447) RNA-binding protein with ( 305) 2011 186.3 6.7e-47
NP_542161 (OMIM: 606447) RNA-binding protein with ( 305) 2011 186.3 6.7e-47
XP_005255105 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 2011 186.3 6.7e-47
XP_005255106 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 2011 186.3 6.7e-47
XP_016878363 (OMIM: 606447) PREDICTED: RNA-binding ( 305) 2011 186.3 6.7e-47
NP_001273555 (OMIM: 606447) RNA-binding protein wi ( 282) 1867 173.8 3.4e-43
NP_001273556 (OMIM: 606447) RNA-binding protein wi ( 257) 1292 124.3 2.5e-28
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 303 39.2 0.0094
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 303 39.2 0.0094
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 303 39.2 0.0094
>>NP_001273554 (OMIM: 606447) RNA-binding protein with s (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
NP_001 SNSSR
>>NP_006702 (OMIM: 606447) RNA-binding protein with seri (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
NP_006 SNSSR
>>NP_542161 (OMIM: 606447) RNA-binding protein with seri (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
NP_542 SNSSR
>>XP_005255105 (OMIM: 606447) PREDICTED: RNA-binding pro (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
XP_005 SNSSR
>>XP_005255106 (OMIM: 606447) PREDICTED: RNA-binding pro (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
XP_005 SNSSR
>>XP_016878363 (OMIM: 606447) PREDICTED: RNA-binding pro (305 aa)
initn: 2011 init1: 2011 opt: 2011 Z-score: 963.0 bits: 186.3 E(85289): 6.7e-47
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
250 260 270 280 290 300
pF1KB8 SNSSR
:::::
XP_016 SNSSR
>>NP_001273555 (OMIM: 606447) RNA-binding protein with s (282 aa)
initn: 1867 init1: 1867 opt: 1867 Z-score: 896.4 bits: 173.8 E(85289): 3.4e-43
Smith-Waterman score: 1867; 100.0% identity (100.0% similar) in 281 aa overlap (25-305:2-282)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::
NP_001 MAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
220 230 240 250 260 270
pF1KB8 SNSSR
:::::
NP_001 SNSSR
280
>>NP_001273556 (OMIM: 606447) RNA-binding protein with s (257 aa)
initn: 1292 init1: 1292 opt: 1292 Z-score: 629.5 bits: 124.3 E(85289): 2.5e-28
Smith-Waterman score: 1313; 85.1% identity (88.4% similar) in 249 aa overlap (25-259:2-250)
10 20 30 40 50 60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
::::::::::::::::::::::::::::::::::::
NP_001 MAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
10 20 30
70 80 90 100 110 120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
100 110 120 130 140 150
190 200 210 220
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID-----------
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGPAPRGAGPPCAGDH
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB8 GQEITATAVLAPWPRPPPRRFSP---PRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRR
: . .:.. :: : :: .. . : . ::
NP_001 GPRAAAATGAAPAPTPPDKQATEALAPVTYTPPSSVLSLF
220 230 240 250
290 300
pF1KB8 SRSPGRRRHRSRSSSNSSR
>>NP_003007 (OMIM: 600813) serine/arginine-rich splicing (221 aa)
initn: 309 init1: 139 opt: 303 Z-score: 170.4 bits: 39.2 E(85289): 0.0094
Smith-Waterman score: 303; 38.6% identity (64.1% similar) in 145 aa overlap (161-305:14-150)
140 150 160 170 180 190
pF1KB8 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI
:.... :: .. : . ..: ::.. .
NP_003 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV
10 20 30 40
200 210 220 230 240 250
pF1KB8 DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRF
.: .: . . :.:.:.:.:.. .:: :. :::. .::.:. . .: . ::: .
NP_003 YIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ--MARYGRPPDSHH
50 60 70 80 90 100
260 270 280 290 300
pF1KB8 SPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR
: :: ::: : . . ::::::::: : :::: .: : ::: : ..::
NP_003 S--RR--GPPPR-RYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRS
110 120 130 140 150
NP_003 RSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEE
160 170 180 190 200 210
>>NP_001182356 (OMIM: 600813) serine/arginine-rich splic (221 aa)
initn: 309 init1: 139 opt: 303 Z-score: 170.4 bits: 39.2 E(85289): 0.0094
Smith-Waterman score: 303; 38.6% identity (64.1% similar) in 145 aa overlap (161-305:14-150)
140 150 160 170 180 190
pF1KB8 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI
:.... :: .. : . ..: ::.. .
NP_001 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV
10 20 30 40
200 210 220 230 240 250
pF1KB8 DMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRF
.: .: . . :.:.:.:.:.. .:: :. :::. .::.:. . .: . ::: .
NP_001 YIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ--MARYGRPPDSHH
50 60 70 80 90 100
260 270 280 290 300
pF1KB8 SPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR
: :: ::: : . . ::::::::: : :::: .: : ::: : ..::
NP_001 S--RR--GPPPR-RYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRS
110 120 130 140 150
NP_001 RSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEE
160 170 180 190 200 210
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:20:42 2016 done: Fri Nov 4 11:20:43 2016
Total Scan time: 8.960 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]