FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8281, 305 aa
  1>>>pF1KB8281 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0520+/-0.000966; mu= -6.2732+/- 0.059
 mean_var=378.9090+/-78.194, 0's: 0 Z-trim(117.2): 54  B-trim: 528 in 1/55
 Lambda= 0.065888
 statistics sampled from 17875 (17927) to 17875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.551), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS10465.1 RNPS1 gene_id:10921|Hs108|chr16        ( 305) 2011 203.9 1.2e-52
CCDS66907.1 RNPS1 gene_id:10921|Hs108|chr16        ( 282) 1867 190.2 1.5e-48
CCDS73811.1 RNPS1 gene_id:10921|Hs108|chr16        ( 257) 1292 135.5 4.1e-32


>>CCDS10465.1 RNPS1 gene_id:10921|Hs108|chr16             (305 aa)
 initn: 2011 init1: 2011 opt: 2011  Z-score: 1058.5  bits: 203.9 E(32554): 1.2e-52
Smith-Waterman score: 2011; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
              250       260       270       280       290       300

            
pF1KB8 SNSSR
       :::::
CCDS10 SNSSR
            

>>CCDS66907.1 RNPS1 gene_id:10921|Hs108|chr16             (282 aa)
 initn: 1867 init1: 1867 opt: 1867  Z-score: 985.0  bits: 190.2 E(32554): 1.5e-48
Smith-Waterman score: 1867; 100.0% identity (100.0% similar) in 281 aa overlap (25-305:2-282)

               10        20        30        40        50        60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
                               ::::::::::::::::::::::::::::::::::::
CCDS66                        MAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
                                      10        20        30       

               70        80        90       100       110       120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
        40        50        60        70        80        90       

              130       140       150       160       170       180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
       100       110       120       130       140       150       

              190       200       210       220       230       240
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA
       160       170       180       190       200       210       

              250       260       270       280       290       300
pF1KB8 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
       220       230       240       250       260       270       

            
pF1KB8 SNSSR
       :::::
CCDS66 SNSSR
       280  

>>CCDS73811.1 RNPS1 gene_id:10921|Hs108|chr16             (257 aa)
 initn: 1292 init1: 1292 opt: 1292  Z-score: 690.1  bits: 135.5 E(32554): 4.1e-32
Smith-Waterman score: 1313; 85.1% identity (88.4% similar) in 249 aa overlap (25-259:2-250)

               10        20        30        40        50        60
pF1KB8 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
                               ::::::::::::::::::::::::::::::::::::
CCDS73                        MAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
                                      10        20        30       

               70        80        90       100       110       120
pF1KB8 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
        40        50        60        70        80        90       

              130       140       150       160       170       180
pF1KB8 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
       100       110       120       130       140       150       

              190       200       210       220                    
pF1KB8 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID-----------
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS73 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGPAPRGAGPPCAGDH
       160       170       180       190       200       210       

     230       240       250          260       270       280      
pF1KB8 GQEITATAVLAPWPRPPPRRFSP---PRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRR
       : . .:..  :: : :: .. .    :  . ::                           
CCDS73 GPRAAAATGAAPAPTPPDKQATEALAPVTYTPPSSVLSLF                    
       220       230       240       250                           

        290       300     
pF1KB8 SRSPGRRRHRSRSSSNSSR




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:20:41 2016 done: Fri Nov  4 11:20:41 2016
 Total Scan time:  2.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]