FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8274, 102 aa
  1>>>pF1KB8274 102 - 102 aa - 102 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8369+/-0.000395; mu= -9.0266+/- 0.025
 mean_var=359.1415+/-71.493, 0's: 0 Z-trim(123.4): 8  B-trim: 391 in 1/56
 Lambda= 0.067677
 statistics sampled from 43271 (43280) to 43271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.507), width:  16
 Scan time:  3.770

The best scores are:                                      opt bits E(85289)
NP_002815 (OMIM: 168440) parathymosin isoform 2 [H ( 102)  627 72.8 1.1e-13


>>NP_002815 (OMIM: 168440) parathymosin isoform 2 [Homo   (102 aa)
 initn: 627 init1: 627 opt: 627  Z-score: 366.9  bits: 72.8 E(85289): 1.1e-13
Smith-Waterman score: 627; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB8 MSEKSVEAAAELSAKDLKEKKEKVEEKASRKERKKEVVEEEENGAEEEEEETAEDGEEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSEKSVEAAAELSAKDLKEKKEKVEEKASRKERKKEVVEEEENGAEEEEEETAEDGEEED
               10        20        30        40        50        60

               70        80        90       100  
pF1KB8 EGEEEDEEEEEEDDEGPALKRAAEEEDEADPKRQKTENGASA
       ::::::::::::::::::::::::::::::::::::::::::
NP_002 EGEEEDEEEEEEDDEGPALKRAAEEEDEADPKRQKTENGASA
               70        80        90       100  




102 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:17:50 2016 done: Fri Nov  4 11:17:51 2016
 Total Scan time:  3.770 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]