FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8269, 201 aa
  1>>>pF1KB8269 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1318+/-0.0009; mu= 13.7298+/- 0.054
 mean_var=57.0242+/-11.203, 0's: 0 Z-trim(104.6): 27  B-trim: 0 in 0/51
 Lambda= 0.169842
 statistics sampled from 7957 (7981) to 7957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.245), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS394.1 PSMB2 gene_id:5690|Hs108|chr1            ( 201) 1319 331.3 2.4e-91
CCDS72755.1 PSMB2 gene_id:5690|Hs108|chr1          (  84)  545 141.5 1.4e-34


>>CCDS394.1 PSMB2 gene_id:5690|Hs108|chr1                 (201 aa)
 initn: 1319 init1: 1319 opt: 1319  Z-score: 1753.4  bits: 331.3 E(32554): 2.4e-91
Smith-Waterman score: 1319; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB8 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSV
              130       140       150       160       170       180

              190       200 
pF1KB8 RIIDKNGIHDLDNISFPKQGS
       :::::::::::::::::::::
CCDS39 RIIDKNGIHDLDNISFPKQGS
              190       200 

>>CCDS72755.1 PSMB2 gene_id:5690|Hs108|chr1               (84 aa)
 initn: 545 init1: 545 opt: 545  Z-score: 734.4  bits: 141.5 E(32554): 1.4e-34
Smith-Waterman score: 545; 100.0% identity (100.0% similar) in 84 aa overlap (118-201:1-84)

        90       100       110       120       130       140       
pF1KB8 LADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY
                                     ::::::::::::::::::::::::::::::
CCDS72                               MDYLAALAKAPFAAHGYGAFLTLSILDRYY
                                             10        20        30

       150       160       170       180       190       200 
pF1KB8 TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPKQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPKQGS
               40        50        60        70        80    




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:14:16 2016 done: Fri Nov  4 11:14:17 2016
 Total Scan time:  1.950 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]