Result of FASTA (omim) for
pF1KB8266
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8266, 190 aa
1>>>pF1KB8266 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9852+/-0.000327; mu= 14.3895+/- 0.020
mean_var=56.9821+/-11.210, 0's: 0 Z-trim(115.1): 41 B-trim: 395 in 1/54
Lambda= 0.169905
statistics sampled from 25346 (25387) to 25346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.298), width: 16
Scan time: 5.490
The best scores are: opt bits E(85289)
NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomer ( 190) 1272 319.6 1.9e-87
NP_005555 (OMIM: 600181) neutrophil gelatinase-ass ( 198) 323 87.0 2.1e-17
NP_001624 (OMIM: 176870) protein AMBP preproprotei ( 352) 261 71.9 1.3e-12
NP_848631 (OMIM: 612905) epididymal-specific lipoc ( 192) 251 69.3 4.3e-12
XP_016870120 (OMIM: 612905) PREDICTED: epididymal- ( 227) 249 68.9 6.9e-12
XP_006717128 (OMIM: 612905) PREDICTED: epididymal- ( 355) 249 69.0 1e-11
XP_011516864 (OMIM: 612905) PREDICTED: epididymal- ( 355) 249 69.0 1e-11
XP_011516862 (OMIM: 612905) PREDICTED: epididymal- ( 382) 249 69.0 1.1e-11
XP_011516863 (OMIM: 612905) PREDICTED: epididymal- ( 383) 249 69.0 1.1e-11
XP_016870121 (OMIM: 612905) PREDICTED: epididymal- ( 184) 170 49.4 3.9e-06
NP_000597 (OMIM: 120930) complement component C8 g ( 202) 167 48.7 7e-06
NP_945184 (OMIM: 609379) epididymal-specific lipoc ( 163) 159 46.7 2.3e-05
NP_055397 (OMIM: 164320) odorant-binding protein 2 ( 170) 146 43.5 0.00021
>>NP_000945 (OMIM: 176803) prostaglandin-H2 D-isomerase (190 aa)
initn: 1272 init1: 1272 opt: 1272 Z-score: 1690.8 bits: 319.6 E(85289): 1.9e-87
Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFL
130 140 150 160 170 180
190
pF1KB8 PQTDKCMTEQ
::::::::::
NP_000 PQTDKCMTEQ
190
>>NP_005555 (OMIM: 600181) neutrophil gelatinase-associa (198 aa)
initn: 281 init1: 99 opt: 323 Z-score: 433.4 bits: 87.0 E(85289): 2.1e-17
Smith-Waterman score: 360; 35.8% identity (62.7% similar) in 193 aa overlap (7-187:6-196)
10 20 30 40 50
pF1KB8 MATHHTLWMGLALLGVL--------GDLQAAPE-AQVSVQPNFQQDKFLGRWFSAGLASN
::.::::::.: .:: :: ..: .: :::...: :.:. .:::.:
NP_005 MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN
10 20 30 40 50
60 70 80 90 100
pF1KB8 SSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY---R
. ::: : .: .. : . :.::...::..:. . :. . : .. .
NP_005 AI-LREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 SPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCK
: ..: : :: :.:.:.:... . . : :.. :::.::. .::::.: : :
NP_005 SYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKI-TLYGRTKELTSELKENFIRFSK
120 130 140 150 160 170
170 180 190
pF1KB8 AQGFTEDTIVFLPQTDKCMTEQ
. :. :. ::: :.:.
NP_005 SLGLPENHIVFPVPIDQCIDG
180 190
>>NP_001624 (OMIM: 176870) protein AMBP preproprotein [H (352 aa)
initn: 244 init1: 175 opt: 261 Z-score: 347.4 bits: 71.9 E(85289): 1.3e-12
Smith-Waterman score: 261; 27.0% identity (61.8% similar) in 178 aa overlap (12-187:13-189)
10 20 30 40 50
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKK
: :.: . .: ...:: ::. ... :.:.. ...:. ::..
NP_001 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 AALSMCKSVVAP-ATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSV
... :.. ::.. ...::: ::. :: . . . . :.. :.. .:. :.
NP_001 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 SVVETDYDQYALLYSQG-SKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTI
::.:.::.::.. .. :. : . : ::.:. : : . : . .. :. ::.:
NP_001 YVVHTNYDEYAIFLTKKFSRHHGPTIT-AKLYGRAPQLRETLLQDFRVVAQGVGIPEDSI
130 140 150 160 170
180 190
pF1KB8 VFLPQTDKCMTEQ
. . .:.
NP_001 FTMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGP
180 190 200 210 220 230
>>NP_848631 (OMIM: 612905) epididymal-specific lipocalin (192 aa)
initn: 208 init1: 113 opt: 251 Z-score: 338.2 bits: 69.3 E(85289): 4.3e-12
Smith-Waterman score: 251; 29.3% identity (60.1% similar) in 188 aa overlap (7-186:7-192)
10 20 30 40 50 60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
::. :.:: :: .: . .:: ..: :.:: :::.:: . :..:
NP_848 MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNS-FRPEHRA
10 20 30 40 50
70 80 90 100 110
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY-RSPHWGSTYSVS
:. .. . :: ... ... : ..:.: ...: ::.. :... .. . :. .
NP_848 LLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREET
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 -VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV
::..:: :.::. :. . .:.. : : . : ..: . .:::...:.::
NP_848 RVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLLPPGTL-DQFICLGRAQGLSDDNIV
120 130 140 150 160 170
180 190
pF1KB8 F------LPQTDKCMTEQ
: ::.. :
NP_848 FPDVTGWSPQASVC
180 190
>>XP_016870120 (OMIM: 612905) PREDICTED: epididymal-spec (227 aa)
initn: 157 init1: 113 opt: 249 Z-score: 334.4 bits: 68.9 E(85289): 6.9e-12
Smith-Waterman score: 249; 29.7% identity (61.7% similar) in 175 aa overlap (7-179:35-207)
10 20 30
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQ
::. :.:: :: .: . .::
XP_016 RWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 DKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLL
..: :.:: :::.:: . :..: :. .. . :: ... ... : ..:.: ...:
XP_016 NQFQGEWFVLGLAGNS-FRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 QPAGSLGSYSY-RSPHWGSTYSVS-VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQT
::.. :... .. . :. . ::..:: :.::. :. . .:.. :
XP_016 IPAAQPGQFTVDHGVEPGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLL
130 140 150 160 170 180
160 170 180 190
pF1KB8 PRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTEQ
: . : ..: . .:::...:.:::
XP_016 PPGTL-DQFICLGRAQGLSDDNIVFPDVTGGALDLSSLPWVAAPA
190 200 210 220
>>XP_006717128 (OMIM: 612905) PREDICTED: epididymal-spec (355 aa)
initn: 157 init1: 113 opt: 249 Z-score: 331.5 bits: 69.0 E(85289): 1e-11
Smith-Waterman score: 249; 29.7% identity (61.7% similar) in 175 aa overlap (7-179:7-179)
10 20 30 40 50 60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
::. :.:: :: .: . .:: ..: :.:: :::.:: . :..:
XP_006 MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNS-FRPEHRA
10 20 30 40 50
70 80 90 100 110
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY-RSPHWGSTYSVS
:. .. . :: ... ... : ..:.: ...: ::.. :... .. . :. .
XP_006 LLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREET
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 -VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV
::..:: :.::. :. . .:.. : : . : ..: . .:::...:.::
XP_006 RVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLLPPGTL-DQFICLGRAQGLSDDNIV
120 130 140 150 160 170
180 190
pF1KB8 FLPQTDKCMTEQ
:
XP_006 FPDVTGNMVHLQACWAVGTGPAGMSLVDPRGAGPSVYPGSSAPACAQGSPGSWVPVLNPG
180 190 200 210 220 230
>>XP_011516864 (OMIM: 612905) PREDICTED: epididymal-spec (355 aa)
initn: 157 init1: 113 opt: 249 Z-score: 331.5 bits: 69.0 E(85289): 1e-11
Smith-Waterman score: 249; 29.7% identity (61.7% similar) in 175 aa overlap (7-179:7-179)
10 20 30 40 50 60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
::. :.:: :: .: . .:: ..: :.:: :::.:: . :..:
XP_011 MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNS-FRPEHRA
10 20 30 40 50
70 80 90 100 110
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY-RSPHWGSTYSVS
:. .. . :: ... ... : ..:.: ...: ::.. :... .. . :. .
XP_011 LLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREET
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 -VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV
::..:: :.::. :. . .:.. : : . : ..: . .:::...:.::
XP_011 RVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLLPPGTL-DQFICLGRAQGLSDDNIV
120 130 140 150 160 170
180 190
pF1KB8 FLPQTDKCMTEQ
:
XP_011 FPDVTGNMVHLQACWAVGTGPAGMSLVDPRGAGPSVYPGSSAPACAQGSPGSWVPVLNPG
180 190 200 210 220 230
>>XP_011516862 (OMIM: 612905) PREDICTED: epididymal-spec (382 aa)
initn: 157 init1: 113 opt: 249 Z-score: 331.0 bits: 69.0 E(85289): 1.1e-11
Smith-Waterman score: 249; 29.7% identity (61.7% similar) in 175 aa overlap (7-179:34-206)
10 20 30
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQ
::. :.:: :: .: . .::
XP_011 RGGRWTWGPLLPHLAGTQETAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 DKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLL
..: :.:: :::.:: . :..: :. .. . :: ... ... : ..:.: ...:
XP_011 NQFQGEWFVLGLAGNS-FRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 QPAGSLGSYSY-RSPHWGSTYSVS-VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQT
::.. :... .. . :. . ::..:: :.::. :. . .:.. :
XP_011 IPAAQPGQFTVDHGVEPGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLL
130 140 150 160 170 180
160 170 180 190
pF1KB8 PRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTEQ
: . : ..: . .:::...:.:::
XP_011 PPGTL-DQFICLGRAQGLSDDNIVFPDVTGNMVHLQACWAVGTGPAGMSLVDPRGAGPSV
190 200 210 220 230 240
>>XP_011516863 (OMIM: 612905) PREDICTED: epididymal-spec (383 aa)
initn: 157 init1: 113 opt: 249 Z-score: 331.0 bits: 69.0 E(85289): 1.1e-11
Smith-Waterman score: 249; 29.7% identity (61.7% similar) in 175 aa overlap (7-179:35-207)
10 20 30
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQ
::. :.:: :: .: . .::
XP_011 RWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 DKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLL
..: :.:: :::.:: . :..: :. .. . :: ... ... : ..:.: ...:
XP_011 NQFQGEWFVLGLAGNS-FRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 QPAGSLGSYSY-RSPHWGSTYSVS-VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQT
::.. :... .. . :. . ::..:: :.::. :. . .:.. :
XP_011 IPAAQPGQFTVDHGVEPGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLL
130 140 150 160 170 180
160 170 180 190
pF1KB8 PRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTEQ
: . : ..: . .:::...:.:::
XP_011 PPGTL-DQFICLGRAQGLSDDNIVFPDVTGNMVHLQACWAVGTGPAGMSLVDPRGAGPSV
190 200 210 220 230 240
>>XP_016870121 (OMIM: 612905) PREDICTED: epididymal-spec (184 aa)
initn: 164 init1: 113 opt: 170 Z-score: 231.2 bits: 49.4 E(85289): 3.9e-06
Smith-Waterman score: 170; 31.0% identity (64.0% similar) in 100 aa overlap (7-106:35-133)
10 20 30
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQ
::. :.:: :: .: . .::
XP_016 RWVSGSPAHGHFLLSVPVGPAAARMRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 DKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLL
..: :.:: :::.:: . :..: :. .. . :: ... ... : ..:.: ...:
XP_016 NQFQGEWFVLGLAGNS-FRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 QPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPR
::.. :...
XP_016 IPAAQPGQFTVDHGVDTRAGWPSSGSACWAGAGCCLPGRWTSSSAWAELRASRMTTSSSQ
130 140 150 160 170 180
190 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:12:10 2016 done: Fri Nov 4 11:12:11 2016
Total Scan time: 5.490 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]