FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8266, 190 aa
  1>>>pF1KB8266 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1720+/-0.000722; mu= 13.1304+/- 0.043
 mean_var=58.4289+/-11.492, 0's: 0 Z-trim(108.3): 18  B-trim: 52 in 1/51
 Lambda= 0.167788
 statistics sampled from 10090 (10106) to 10090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.31), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9           ( 190) 1272 315.8   1e-86
CCDS6892.1 LCN2 gene_id:3934|Hs108|chr9            ( 198)  323 86.1 1.5e-17
CCDS7006.1 LCN15 gene_id:389812|Hs108|chr9         ( 184)  311 83.2   1e-16
CCDS6800.1 AMBP gene_id:259|Hs108|chr9             ( 352)  261 71.2   8e-13
CCDS7018.2 LCN12 gene_id:286256|Hs108|chr9         ( 192)  251 68.7 2.5e-12


>>CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9                (190 aa)
 initn: 1272 init1: 1272 opt: 1272  Z-score: 1670.5  bits: 315.8 E(32554): 1e-86
Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFL
              130       140       150       160       170       180

              190
pF1KB8 PQTDKCMTEQ
       ::::::::::
CCDS70 PQTDKCMTEQ
              190

>>CCDS6892.1 LCN2 gene_id:3934|Hs108|chr9                 (198 aa)
 initn: 281 init1:  99 opt: 323  Z-score: 428.7  bits: 86.1 E(32554): 1.5e-17
Smith-Waterman score: 360; 35.8% identity (62.7% similar) in 193 aa overlap (7-187:6-196)

               10                20         30        40        50 
pF1KB8 MATHHTLWMGLALLGVL--------GDLQAAPE-AQVSVQPNFQQDKFLGRWFSAGLASN
             ::.::::::.:        .::  ::  ..: .: :::...: :.:. .:::.:
CCDS68  MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGN
                10        20        30        40        50         

              60        70        80        90       100           
pF1KB8 SSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY---R
       .  ::: :   .:  ..     : . :.::...::..:.     . :. . : ..    .
CCDS68 AI-LREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFVPGCQPGEFTLGNIK
      60         70        80        90       100       110        

      110       120       130       140       150       160        
pF1KB8 SPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCK
       :    ..: : :: :.:.:.:... .  .   : :.. :::.::.   .::::.:  : :
CCDS68 SYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKI-TLYGRTKELTSELKENFIRFSK
      120       130       140       150        160       170       

      170       180       190
pF1KB8 AQGFTEDTIVFLPQTDKCMTEQ
       . :. :. :::    :.:.   
CCDS68 SLGLPENHIVFPVPIDQCIDG 
       180       190         

>>CCDS7006.1 LCN15 gene_id:389812|Hs108|chr9              (184 aa)
 initn: 281 init1: 144 opt: 311  Z-score: 413.5  bits: 83.2 E(32554): 1e-16
Smith-Waterman score: 311; 34.6% identity (57.5% similar) in 179 aa overlap (13-189:5-179)

               10        20        30          40        50        
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSV--QPNFQQDKFLGRWFSAGLASNSSWLREK
                   :::..  :  :: ::. :  ::.:. .:: : :. ...::.   .  :
CCDS70         MMSFLLGAILTLLWAPTAQAEVLLQPDFNAEKFSGLWYVVSMASDCRVFLGK
                       10        20        30        40        50  

       60        70        80        90       100       110        
pF1KB8 KAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSV
       :  :::   .. :. .:::..   :   . :.        .:: : .  : :  :   .:
CCDS70 KDHLSMSTRAIRPTEEGGLHVHMEFPGADGCNQVDAEYLKVGSEGHF--RVPALGYL-DV
             60        70        80        90         100          

      120       130       140       150       160       170        
pF1KB8 SVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV
        .:.:::...:.::   ..  :    :. ::::::    .  ..:  :  . :. .: .:
CCDS70 RIVDTDYSSFAVLYIY-KELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMV
     110       120        130       140       150       160        

      180       190    
pF1KB8 FLPQTDKCMTEQ    
       .:::.: :  :     
CCDS70 MLPQSDACNPESKEAP
      170       180    

>>CCDS6800.1 AMBP gene_id:259|Hs108|chr9                  (352 aa)
 initn: 244 init1: 175 opt: 261  Z-score: 343.7  bits: 71.2 E(32554): 8e-13
Smith-Waterman score: 261; 27.0% identity (61.8% similar) in 178 aa overlap (12-187:13-189)

                10        20        30        40        50         
pF1KB8  MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKK
                   : :.: .    .:  ...:: ::. ... :.:.. ...:.  ::..  
CCDS68 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM
               10        20        30        40        50        60

      60        70         80        90       100       110        
pF1KB8 AALSMCKSVVAP-ATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSV
         ...   :..  ::.. ...:::  ::. ::  .   . . . :.. :.. .:. :.  
CCDS68 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES
               70        80        90       100       110       120

      120       130        140       150       160       170       
pF1KB8 SVVETDYDQYALLYSQG-SKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTI
        ::.:.::.::.. ..  :.  :  .  : ::.:.   :  : . : .  .. :. ::.:
CCDS68 YVVHTNYDEYAIFLTKKFSRHHGPTIT-AKLYGRAPQLRETLLQDFRVVAQGVGIPEDSI
              130       140        150       160       170         

       180       190                                               
pF1KB8 VFLPQTDKCMTEQ                                               
         . .  .:.                                                  
CCDS68 FTMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGP
     180       190       200       210       220       230         

>>CCDS7018.2 LCN12 gene_id:286256|Hs108|chr9              (192 aa)
 initn: 208 init1: 113 opt: 251  Z-score: 334.7  bits: 68.7 E(32554): 2.5e-12
Smith-Waterman score: 251; 29.3% identity (60.1% similar) in 188 aa overlap (7-186:7-192)

               10        20        30        40        50        60
pF1KB8 MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKA
             ::. :.:: ::     .:      . .:: ..: :.::  :::.:: .  :..:
CCDS70 MRLLCGLWLWLSLLKVLQAQTPTPLPLPPPMQSFQGNQFQGEWFVLGLAGNS-FRPEHRA
               10        20        30        40        50          

               70        80        90       100        110         
pF1KB8 ALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY-RSPHWGSTYSVS
        :.   ..   . :: ... ... : ..:.: ...: ::.. :...  .. . :.    .
CCDS70 LLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREET
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 -VVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV
        ::..:: :.::. :.   .    .:.. :      : . : ..:  . .:::...:.::
CCDS70 RVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSWLLPPGTL-DQFICLGRAQGLSDDNIV
     120       130       140       150       160        170        

            180       190
pF1KB8 F------LPQTDKCMTEQ
       :       ::.. :    
CCDS70 FPDVTGWSPQASVC    
      180       190      




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:12:09 2016 done: Fri Nov  4 11:12:09 2016
 Total Scan time:  1.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]