FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8260, 199 aa
  1>>>pF1KB8260 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3650+/-0.000705; mu= 12.6196+/- 0.043
 mean_var=61.8455+/-12.220, 0's: 0 Z-trim(109.0): 10  B-trim: 0 in 0/51
 Lambda= 0.163087
 statistics sampled from 10577 (10582) to 10577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS33436.1 C20orf27 gene_id:54976|Hs108|chr20     ( 199) 1345 324.5 2.6e-89
CCDS58763.1 C20orf27 gene_id:54976|Hs108|chr20     ( 174) 1142 276.7 5.5e-75


>>CCDS33436.1 C20orf27 gene_id:54976|Hs108|chr20          (199 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1716.9  bits: 324.5 E(32554): 2.6e-89
Smith-Waterman score: 1345; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KB8 MAAANKGKCLPGVVGLAQALPVGPGRRAIAAGNKPRVRSIRFAAGHDAEGSHSHVHFDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAAANKGKCLPGVVGLAQALPVGPGRRAIAAGNKPRVRSIRFAAGHDAEGSHSHVHFDEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LHDSVVMVTQESDSSFLVKVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LHDSVVMVTQESDSSFLVKVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVK
              130       140       150       160       170       180

              190         
pF1KB8 CVGAELEYDSEHSDWHGFD
       :::::::::::::::::::
CCDS33 CVGAELEYDSEHSDWHGFD
              190         

>>CCDS58763.1 C20orf27 gene_id:54976|Hs108|chr20          (174 aa)
 initn: 1142 init1: 1142 opt: 1142  Z-score: 1459.7  bits: 276.7 E(32554): 5.5e-75
Smith-Waterman score: 1142; 98.3% identity (98.3% similar) in 172 aa overlap (28-199:3-174)

               10        20        30        40        50        60
pF1KB8 MAAANKGKCLPGVVGLAQALPVGPGRRAIAAGNKPRVRSIRFAAGHDAEGSHSHVHFDEK
                                  :   :::::::::::::::::::::::::::::
CCDS58                          MAAANKGNKPRVRSIRFAAGHDAEGSHSHVHFDEK
                                        10        20        30     

               70        80        90       100       110       120
pF1KB8 LHDSVVMVTQESDSSFLVKVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHDSVVMVTQESDSSFLVKVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KB8 VPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVK
         100       110       120       130       140       150     

              190         
pF1KB8 CVGAELEYDSEHSDWHGFD
       :::::::::::::::::::
CCDS58 CVGAELEYDSEHSDWHGFD
         160       170    




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:06:39 2016 done: Fri Nov  4 11:06:39 2016
 Total Scan time:  1.550 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]