Result of FASTA (ccds) for
pF1KB8258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8258, 239 aa
1>>>pF1KB8258 239 - 239 aa - 239 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7852+/-0.000732; mu= 16.9112+/- 0.044
mean_var=56.7536+/-11.254, 0's: 0 Z-trim(108.1): 21 B-trim: 2 in 1/51
Lambda= 0.170246
statistics sampled from 9958 (9978) to 9958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.307), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 ( 239) 1583 396.6 7.8e-111
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 ( 213) 1299 326.8 7.1e-90
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 ( 219) 879 223.6 8.2e-59
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 ( 300) 354 94.8 7e-20
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 ( 263) 343 92.0 4.1e-19
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 ( 277) 342 91.8 5e-19
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 ( 272) 331 89.1 3.2e-18
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 ( 276) 331 89.1 3.3e-18
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 ( 273) 328 88.3 5.4e-18
>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 (239 aa)
initn: 1583 init1: 1583 opt: 1583 Z-score: 2103.3 bits: 396.6 E(32554): 7.8e-111
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
190 200 210 220 230
>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 (213 aa)
initn: 1299 init1: 1299 opt: 1299 Z-score: 1727.0 bits: 326.8 E(32554): 7.1e-90
Smith-Waterman score: 1299; 99.5% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
:::::::::::::.
CCDS73 MTKEECLQFTANAFFFYPQLSLWPWSGMAPVEE
190 200 210
>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 (219 aa)
initn: 877 init1: 518 opt: 879 Z-score: 1169.3 bits: 223.6 E(32554): 8.2e-59
Smith-Waterman score: 879; 62.4% identity (89.1% similar) in 202 aa overlap (30-231:16-216)
10 20 30 40 50 60
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
:: ::::::::.::::::.:.:::...: .
CCDS47 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAV
10 20 30 40
70 80 90 100 110 120
pF1KB8 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM
.::: :::.:.:.::.: ::::::.::::: ..::: .:.:::.::::: .::.. ...
CCDS47 VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG
:.::::: : ...:::: .::::::.. .:::..:: ::::::::..:::::::.:. :
CCDS47 SYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPG
110 120 130 140 150 160
190 200 210 220 230
pF1KB8 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
:. ::: .::..:.:::: ::::::::: :..:. .::...:.::...:::
CCDS47 MSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
170 180 190 200 210
>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 (300 aa)
initn: 332 init1: 305 opt: 354 Z-score: 470.4 bits: 94.8 E(32554): 7e-20
Smith-Waterman score: 354; 32.7% identity (60.7% similar) in 214 aa overlap (9-219:23-234)
10 20 30 40
pF1KB8 MAATLLAARGAGPAPAWG--PEAFTPDWESREVSTGTTIMAVQFDG
:..: : : :..: : .. ::: .: .:
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQIHGPR-LAHGTTTLAFRFRH
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 GVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIEL
::. .::.:.. :::.: .. :. :.:.... ::..:: . .. .: .. ..
CCDS41 GVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELRE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 NEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGG
.. : : .::.:.. : .:: :: .. . ::: . : ... : : .. .. :
CCDS41 GQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD-RSGPELFYVYSDGTRLQGDIFSVG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVL
::: : :: .: :: :. .: .. :.: : .::. ::: . : . ::: :
CCDS41 SGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSR
180 190 200 210 220 230
230
pF1KB8 LGDQIPKFAVATLPPA
CCDS41 SDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRMPAGTE
240 250 260 270 280 290
>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 (263 aa)
initn: 318 init1: 262 opt: 343 Z-score: 456.7 bits: 92.0 E(32554): 4.1e-19
Smith-Waterman score: 343; 32.2% identity (60.0% similar) in 205 aa overlap (14-217:43-242)
10 20 30 40
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFD
::.:: .:. . :. ::: .: .:
CCDS95 VNQRGFFGLGGRADLLDLGPGSLSDGLSLAAPGWG----VPEEPGIEMLHGTTTLAFKFR
20 30 40 50 60
50 60 70 80 90 100
pF1KB8 GGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIE
::...::::.:.:.:::.... :. :. .. .:.::: . .. : .. ..
CCDS95 HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 LNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIG
.: : .:..:. .: :.:. : : .: ::: . : : :. . .:..:
CCDS95 NKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQV
::: : :: .: : . :. ... :. : ::. :::.. : . :.:
CCDS95 -SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS
190 200 210 220 230 240
230
pF1KB8 LLGDQIPKFAVATLPPA
CCDS95 SDNVADLHEKYSGSTP
250 260
>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 (277 aa)
initn: 336 init1: 259 opt: 342 Z-score: 455.0 bits: 91.8 E(32554): 5e-19
Smith-Waterman score: 342; 32.1% identity (65.2% similar) in 187 aa overlap (33-219:42-227)
10 20 30 40 50 60
pF1KB8 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
::::: .: . :.:::::.:.: : .:.
CCDS68 GGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVAD
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB8 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
. .:. : :.:: .:.::::. ... .. .: .::. .. : : :: ..:.: .
CCDS68 KNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLF
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB8 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
::. . :.....: : : ..::. : . .. :::: .. . .: :
CCDS68 RYQGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDME
140 150 160 170 180 190
190 200 210 220 230
pF1KB8 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
.:: .....:.: .. : .::. : : .:... ..
CCDS68 EEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKG
200 210 220 230 240 250
CCDS68 TTAVLTEKITPLEIEVLEETVQTMDTS
260 270
>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 (272 aa)
initn: 322 init1: 280 opt: 331 Z-score: 440.5 bits: 89.1 E(32554): 3.2e-18
Smith-Waterman score: 331; 32.8% identity (62.4% similar) in 189 aa overlap (30-217:64-251)
10 20 30 40 50
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSY
:.. ::: .: .:. ::. ..:::...:::
CCDS47 PTPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSY
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB8 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKE
:. ..:. :. .. :: ::: : .. . .. .. .: : .:..:...
CCDS47 ISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSN
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB8 MCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR
: .:: : : .: ::: ..: .: : : . .. :::..: :: .:. ::
CCDS47 MMCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYR
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB8 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPP
... :: .. :.: : .::. ::::. . . :.:
CCDS47 PNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
220 230 240 250 260 270
pF1KB8 A
>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 (276 aa)
initn: 322 init1: 280 opt: 331 Z-score: 440.4 bits: 89.1 E(32554): 3.3e-18
Smith-Waterman score: 331; 32.8% identity (62.4% similar) in 189 aa overlap (30-217:68-255)
10 20 30 40 50
pF1KB8 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSY
:.. ::: .: .:. ::. ..:::...:::
CCDS47 RSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSY
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB8 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKE
:. ..:. :. .. :: ::: : .. . .. .. .: : .:..:...
CCDS47 ISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSN
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB8 MCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR
: .:: : : .: ::: ..: .: : : . .. :::..: :: .:. ::
CCDS47 MMCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYR
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB8 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPP
... :: .. :.: : .::. ::::. . . :.:
CCDS47 PNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
220 230 240 250 260 270
pF1KB8 A
>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 (273 aa)
initn: 286 init1: 245 opt: 328 Z-score: 436.5 bits: 88.3 E(32554): 5.4e-18
Smith-Waterman score: 328; 29.9% identity (65.8% similar) in 187 aa overlap (33-219:38-223)
10 20 30 40 50 60
pF1KB8 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
::::: .. :. ::.::::.:.:. : .:.
CCDS10 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
. .:. : .:.:: .: :::.. .. :. .. .:.. .. : : :.. .... .
CCDS10 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
::. . :..:..: : : :.:.: : . : :. :::.. . .. .. .::
CCDS10 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
: . ..:.. .. : .::: . .:...:..
CCDS10 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
190 200 210 220 230 240
CCDS10 TTAVLTQTVKPLTLELVEETVQAMEVE
250 260 270
239 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:06:05 2016 done: Fri Nov 4 11:06:06 2016
Total Scan time: 1.870 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]