FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8256, 355 aa
  1>>>pF1KB8256 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3257+/-0.000841; mu= 9.1199+/- 0.051
 mean_var=124.2415+/-25.366, 0's: 0 Z-trim(111.5): 26  B-trim: 98 in 1/51
 Lambda= 0.115064
 statistics sampled from 12376 (12397) to 12376 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS8038.2 STX5 gene_id:6811|Hs108|chr11           ( 355) 2239 382.2 3.6e-106
CCDS58140.1 STX5 gene_id:6811|Hs108|chr11          ( 321) 1913 328.1 6.5e-90
CCDS81578.1 STX5 gene_id:6811|Hs108|chr11          ( 301) 1877 322.1 3.9e-88


>>CCDS8038.2 STX5 gene_id:6811|Hs108|chr11                (355 aa)
 initn: 2239 init1: 2239 opt: 2239  Z-score: 2019.5  bits: 382.2 E(32554): 3.6e-106
Smith-Waterman score: 2239; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KB8 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 RKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEET
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KB8 IQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 IQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA
              310       320       330       340       350     

>>CCDS58140.1 STX5 gene_id:6811|Hs108|chr11               (321 aa)
 initn: 1969 init1: 1913 opt: 1913  Z-score: 1727.7  bits: 328.1 E(32554): 6.5e-90
Smith-Waterman score: 1913; 99.3% identity (99.7% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB8 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MIPRKRYGSKNTDQGVYLGLSKTQVLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEET
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KB8 IQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA
       :: .                                                   
CCDS58 IQSVLLFPLLPALSPGSTRTC                                  
              310       320                                   

>>CCDS81578.1 STX5 gene_id:6811|Hs108|chr11               (301 aa)
 initn: 1877 init1: 1877 opt: 1877  Z-score: 1695.8  bits: 322.1 E(32554): 3.9e-88
Smith-Waterman score: 1877; 100.0% identity (100.0% similar) in 301 aa overlap (55-355:1-301)

           30        40        50        60        70        80    
pF1KB8 VLSPATAGSSSSDIAPLPPPVTLVPPPPDTMSCRDRTQEFLSACKSLQTRQNGIQTNKPA
                                     ::::::::::::::::::::::::::::::
CCDS81                               MSCRDRTQEFLSACKSLQTRQNGIQTNKPA
                                             10        20        30

           90       100       110       120       130       140    
pF1KB8 LRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDIN
               40        50        60        70        80        90

          150       160       170       180       190       200    
pF1KB8 SLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQ
              100       110       120       130       140       150

          210       220       230       240       250       260    
pF1KB8 RSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RSRREQFSRAPVSALPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDS
              160       170       180       190       200       210

          270       280       290       300       310       320    
pF1KB8 YIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILK
              220       230       240       250       260       270

          330       340       350     
pF1KB8 YFQSVTSNRWLMVKIFLILIVFFIIFVVFLA
       :::::::::::::::::::::::::::::::
CCDS81 YFQSVTSNRWLMVKIFLILIVFFIIFVVFLA
              280       290       300 




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:05:27 2016 done: Fri Nov  4 11:05:28 2016
 Total Scan time:  2.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]