FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8250, 122 aa
  1>>>pF1KB8250 122 - 122 aa - 122 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8111+/-0.000392; mu= -0.3590+/- 0.025
 mean_var=127.4325+/-24.800, 0's: 0 Z-trim(115.5): 12  B-trim: 64 in 1/53
 Lambda= 0.113615
 statistics sampled from 26011 (26013) to 26011 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.305), width:  16
 Scan time:  3.810

The best scores are:                                      opt bits E(85289)
NP_002613 (OMIM: 604897) prefoldin subunit 1 [Homo ( 122)  747 132.8 1.4e-31
XP_005268522 (OMIM: 604897) PREDICTED: prefoldin s ( 115)  591 107.2 6.5e-24


>>NP_002613 (OMIM: 604897) prefoldin subunit 1 [Homo sap  (122 aa)
 initn: 747 init1: 747 opt: 747  Z-score: 688.1  bits: 132.8 E(85289): 1.4e-31
Smith-Waterman score: 747; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB8 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR
               70        80        90       100       110       120

         
pF1KB8 AQ
       ::
NP_002 AQ
         

>>XP_005268522 (OMIM: 604897) PREDICTED: prefoldin subun  (115 aa)
 initn: 591 init1: 591 opt: 591  Z-score: 550.3  bits: 107.2 E(85289): 6.5e-24
Smith-Waterman score: 591; 97.0% identity (98.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KB8 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR
       ::::::::::::::::::::::::::::::::::: . ::                    
XP_005 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEVEASYCFNLKSAFNLKSVIF     
               70        80        90       100       110          

         
pF1KB8 AQ




122 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:01:33 2016 done: Fri Nov  4 11:01:34 2016
 Total Scan time:  3.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]