FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8250, 122 aa
  1>>>pF1KB8250 122 - 122 aa - 122 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5313+/-0.000976; mu= 1.1723+/- 0.059
 mean_var=120.0501+/-23.441, 0's: 0 Z-trim(107.7): 13  B-trim: 15 in 1/51
 Lambda= 0.117056
 statistics sampled from 9769 (9772) to 9769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.3), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS4222.1 PFDN1 gene_id:5201|Hs108|chr5           ( 122)  747 136.3 4.6e-33


>>CCDS4222.1 PFDN1 gene_id:5201|Hs108|chr5                (122 aa)
 initn: 747 init1: 747 opt: 747  Z-score: 707.1  bits: 136.3 E(32554): 4.6e-33
Smith-Waterman score: 747; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB8 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR
               70        80        90       100       110       120

         
pF1KB8 AQ
       ::
CCDS42 AQ
         




122 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:01:33 2016 done: Fri Nov  4 11:01:33 2016
 Total Scan time:  1.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]