Result of FASTA (omim) for
pF1KB8249
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8249, 239 aa
1>>>pF1KB8249 239 - 239 aa - 239 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5905+/-0.000417; mu= 8.9718+/- 0.026
mean_var=101.7615+/-20.055, 0's: 0 Z-trim(113.4): 25 B-trim: 1088 in 2/50
Lambda= 0.127140
statistics sampled from 22668 (22681) to 22668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.266), width: 16
Scan time: 5.510
The best scores are: opt bits E(85289)
NP_063940 (OMIM: 605219,614152) diablo homolog, mi ( 239) 1507 286.7 2.4e-77
NP_620308 (OMIM: 605219,614152) diablo homolog, mi ( 186) 1090 210.2 2.1e-54
NP_001265233 (OMIM: 605219,614152) diablo homolog, ( 186) 1090 210.2 2.1e-54
NP_001265232 (OMIM: 605219,614152) diablo homolog, ( 166) 1010 195.5 4.9e-50
NP_001265231 (OMIM: 605219,614152) diablo homolog, ( 142) 835 163.3 2e-40
NP_001265271 (OMIM: 605219,614152) diablo homolog, ( 195) 829 162.3 5.6e-40
>>NP_063940 (OMIM: 605219,614152) diablo homolog, mitoch (239 aa)
initn: 1507 init1: 1507 opt: 1507 Z-score: 1509.6 bits: 286.7 E(85289): 2.4e-77
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KB8 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_063 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_063 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_063 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_063 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
190 200 210 220 230
>>NP_620308 (OMIM: 605219,614152) diablo homolog, mitoch (186 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 1097.8 bits: 210.2 E(85289): 2.1e-54
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 179 aa overlap (61-239:8-186)
40 50 60 70 80 90
pF1KB8 KKRCFSELIRPWHKTVTIGFGVTLCAVPIAQKSEPHSLSSEALMRRAVSLVTDSTSTFLS
::::::::::::::::::::::::::::::
NP_620 MKSDFYFQKSEPHSLSSEALMRRAVSLVTDSTSTFLS
10 20 30
100 110 120 130 140 150
pF1KB8 QTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 QTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 LKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAE
100 110 120 130 140 150
220 230
pF1KB8 AQIEELRQKTQEEGEERAESEQEAYLRED
:::::::::::::::::::::::::::::
NP_620 AQIEELRQKTQEEGEERAESEQEAYLRED
160 170 180
>>NP_001265233 (OMIM: 605219,614152) diablo homolog, mit (186 aa)
initn: 1090 init1: 1090 opt: 1090 Z-score: 1097.8 bits: 210.2 E(85289): 2.1e-54
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 179 aa overlap (61-239:8-186)
40 50 60 70 80 90
pF1KB8 KKRCFSELIRPWHKTVTIGFGVTLCAVPIAQKSEPHSLSSEALMRRAVSLVTDSTSTFLS
::::::::::::::::::::::::::::::
NP_001 MKSDFYFQKSEPHSLSSEALMRRAVSLVTDSTSTFLS
10 20 30
100 110 120 130 140 150
pF1KB8 QTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 LKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAE
100 110 120 130 140 150
220 230
pF1KB8 AQIEELRQKTQEEGEERAESEQEAYLRED
:::::::::::::::::::::::::::::
NP_001 AQIEELRQKTQEEGEERAESEQEAYLRED
160 170 180
>>NP_001265232 (OMIM: 605219,614152) diablo homolog, mit (166 aa)
initn: 1010 init1: 1010 opt: 1010 Z-score: 1019.3 bits: 195.5 E(85289): 4.9e-50
Smith-Waterman score: 1010; 100.0% identity (100.0% similar) in 166 aa overlap (74-239:1-166)
50 60 70 80 90 100
pF1KB8 KTVTIGFGVTLCAVPIAQKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEY
::::::::::::::::::::::::::::::
NP_001 MRRAVSLVTDSTSTFLSQTTYALIEAITEY
10 20 30
110 120 130 140 150 160
pF1KB8 TKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEE
100 110 120 130 140 150
230
pF1KB8 GEERAESEQEAYLRED
::::::::::::::::
NP_001 GEERAESEQEAYLRED
160
>>NP_001265231 (OMIM: 605219,614152) diablo homolog, mit (142 aa)
initn: 835 init1: 835 opt: 835 Z-score: 846.8 bits: 163.3 E(85289): 2e-40
Smith-Waterman score: 835; 98.5% identity (99.3% similar) in 137 aa overlap (103-239:6-142)
80 90 100 110 120 130
pF1KB8 LMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEV
: .:::::::::::::::::::::::::::
NP_001 MKSDFYFQAVYTLTSLYRQYTSLLGKMNSEEEDEV
10 20 30
140 150 160 170 180 190
pF1KB8 WQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKL
40 50 60 70 80 90
200 210 220 230
pF1KB8 QVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
100 110 120 130 140
>>NP_001265271 (OMIM: 605219,614152) diablo homolog, mit (195 aa)
initn: 829 init1: 829 opt: 829 Z-score: 838.8 bits: 162.3 E(85289): 5.6e-40
Smith-Waterman score: 1153; 81.6% identity (81.6% similar) in 239 aa overlap (1-239:1-195)
10 20 30 40 50 60
pF1KB8 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
: :::::::::::::::
NP_001 Q--------------------------------------------AVYTLTSLYRQYTSL
70
130 140 150 160 170 180
pF1KB8 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
80 90 100 110 120 130
190 200 210 220 230
pF1KB8 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
140 150 160 170 180 190
239 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:00:07 2016 done: Fri Nov 4 11:00:08 2016
Total Scan time: 5.510 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]