FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8249, 239 aa
  1>>>pF1KB8249 239 - 239 aa - 239 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7635+/-0.000984; mu= 7.8694+/- 0.059
 mean_var=96.4319+/-18.293, 0's: 0 Z-trim(106.4): 15  B-trim: 0 in 0/51
 Lambda= 0.130606
 statistics sampled from 8940 (8944) to 8940 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.275), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS9228.1 DIABLO gene_id:56616|Hs108|chr12        ( 239) 1507 294.0 5.9e-80
CCDS73541.1 DIABLO gene_id:56616|Hs108|chr12       ( 166) 1010 200.3 6.6e-52
CCDS9229.1 DIABLO gene_id:56616|Hs108|chr12        ( 195)  829 166.2 1.4e-41


>>CCDS9228.1 DIABLO gene_id:56616|Hs108|chr12             (239 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 1549.0  bits: 294.0 E(32554): 5.9e-80
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB8 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB8 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
              190       200       210       220       230         

>>CCDS73541.1 DIABLO gene_id:56616|Hs108|chr12            (166 aa)
 initn: 1010 init1: 1010 opt: 1010  Z-score: 1045.4  bits: 200.3 E(32554): 6.6e-52
Smith-Waterman score: 1010; 100.0% identity (100.0% similar) in 166 aa overlap (74-239:1-166)

            50        60        70        80        90       100   
pF1KB8 KTVTIGFGVTLCAVPIAQKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEY
                                     ::::::::::::::::::::::::::::::
CCDS73                               MRRAVSLVTDSTSTFLSQTTYALIEAITEY
                                             10        20        30

           110       120       130       140       150       160   
pF1KB8 TKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGL
               40        50        60        70        80        90

           170       180       190       200       210       220   
pF1KB8 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEE
              100       110       120       130       140       150

           230         
pF1KB8 GEERAESEQEAYLRED
       ::::::::::::::::
CCDS73 GEERAESEQEAYLRED
              160      

>>CCDS9229.1 DIABLO gene_id:56616|Hs108|chr12             (195 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 859.9  bits: 166.2 E(32554): 1.4e-41
Smith-Waterman score: 1153; 81.6% identity (81.6% similar) in 239 aa overlap (1-239:1-195)

               10        20        30        40        50        60
pF1KB8 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MAALKSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLCAVPIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLTSLYRQYTSL
       :                                            :::::::::::::::
CCDS92 Q--------------------------------------------AVYTLTSLYRQYTSL
                                                           70      

              130       140       150       160       170       180
pF1KB8 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQAS
         80        90       100       110       120       130      

              190       200       210       220       230         
pF1KB8 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 ITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIEELRQKTQEEGEERAESEQEAYLRED
        140       150       160       170       180       190     




239 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:00:06 2016 done: Fri Nov  4 11:00:07 2016
 Total Scan time:  2.220 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]