Result of FASTA (ccds) for
pF1KB8245
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8245, 180 aa
1>>>pF1KB8245 180 - 180 aa - 180 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3419+/-0.00106; mu= 12.6660+/- 0.065
mean_var=80.8293+/-18.183, 0's: 0 Z-trim(104.5): 168 B-trim: 543 in 2/48
Lambda= 0.142656
statistics sampled from 7751 (7956) to 7751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.244), width: 16
Scan time: 1.440
The best scores are: opt bits E(32554)
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 1173 250.9 3e-67
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 1096 235.1 1.8e-62
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 975 210.2 5.6e-55
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 960 207.1 4.8e-54
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 797 173.6 5.8e-44
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 699 153.4 7.1e-38
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 664 146.6 2.5e-35
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 580 129.3 4e-30
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 569 126.6 7.9e-30
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 564 125.6 1.6e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 547 122.1 1.9e-28
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 552 123.5 2.1e-28
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 528 118.2 2.9e-27
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 515 115.6 1.9e-26
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 505 113.5 7.4e-26
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 503 113.1 1e-25
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 503 113.1 1.1e-25
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 482 108.6 1.6e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 460 104.2 4.5e-23
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 452 102.5 1.2e-22
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 452 102.6 1.5e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 441 100.3 7e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 427 97.4 5.3e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 399 91.4 1.6e-19
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 399 91.6 2.3e-19
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 399 91.6 2.7e-19
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 399 91.6 2.7e-19
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 393 90.3 4.8e-19
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 393 90.3 4.8e-19
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 391 89.8 5.2e-19
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 391 89.8 5.2e-19
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 372 86.1 1.3e-17
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 362 84.0 4.8e-17
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 360 83.6 7.3e-17
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 348 81.2 4.3e-16
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 305 72.3 1.8e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 304 72.4 4e-13
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 299 71.1 4.7e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 297 70.8 7.1e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 284 68.0 3.9e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 280 67.1 5.7e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 275 66.1 1.1e-11
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 268 64.7 3.8e-11
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 1173 init1: 1173 opt: 1173 Z-score: 1320.8 bits: 250.9 E(32554): 3e-67
Smith-Waterman score: 1173; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 1096 init1: 1096 opt: 1096 Z-score: 1235.1 bits: 235.1 E(32554): 1.8e-62
Smith-Waterman score: 1096; 90.0% identity (97.2% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::.:.::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
::::::::::::.:::::.::::::::::::::::::::.:: :::::::: :::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
::.::::::.:::: .::.::::::: ::.:::::::::::::::::.::::::.:::::
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 975 init1: 975 opt: 975 Z-score: 1100.5 bits: 210.2 E(32554): 5.6e-55
Smith-Waterman score: 975; 81.9% identity (94.4% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: ...::. :::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
: ::::::::::.:::::.::::::::::::::::::::..:. .::..:: :::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
::.::::::::::: .:.::::::.:::.:.::.::::::.: :::::::::::.:
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
CCDS15 K
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1083.8 bits: 207.1 E(32554): 4.8e-54
Smith-Waterman score: 960; 78.9% identity (94.4% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: ...:.. :.:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
: ::::::::::.:::::.::::::::::::::::::::..:. .::..:: :::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
::.::::::::::: .:.::::::.:::.:.::.::::::.: :::::::::.:.:...
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
CCDS87 K
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 810 init1: 783 opt: 797 Z-score: 902.7 bits: 173.6 E(32554): 5.8e-44
Smith-Waterman score: 797; 65.5% identity (88.9% similar) in 171 aa overlap (5-175:1-171)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
.....:..::.:.:::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
. :.::::::::.:::::.::. .::::::::: ::.::.:. .::.... :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
.:.::::::::.:: :. .:::: .:.:.:::: .:::.: :::::: ::..
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 699 init1: 699 opt: 699 Z-score: 793.5 bits: 153.4 E(32554): 7.1e-38
Smith-Waterman score: 699; 58.3% identity (82.2% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: .::.:: ::: ..::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
. : :::.::: ::: :. :..::...:.:::: ::.:: .:: :: .::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
:..::::::. .::. :::...::: .:..: : . : ::.:::: :...:: . :..:
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
CCDS44 Q
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 676 init1: 532 opt: 664 Z-score: 747.7 bits: 146.6 E(32554): 2.5e-35
Smith-Waterman score: 664; 59.1% identity (84.8% similar) in 164 aa overlap (15-177:402-565)
10 20 30 40
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
: ..:.. .:::.:::::::.::: :..
CCDS39 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB8 TIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA
:::::::::::::::. ::.:::::. ..:::::::. :::...:::::. :.::.:.
CCDS39 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB8 DELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NRTWYVQATCATQG
.:: :.: :::::.::.::::::. .:... :.:. :.:..: .:.::.:. : .:
CCDS39 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
500 510 520 530 540 550
170 180
pF1KB8 TGLYEGLDWLSNELSKR
:::::::::: .:
CCDS39 MGLYEGLDWLSRQLVAAGVLDVA
560 570
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 591 init1: 532 opt: 580 Z-score: 654.3 bits: 129.3 E(32554): 4e-30
Smith-Waterman score: 580; 58.2% identity (85.6% similar) in 146 aa overlap (15-159:402-546)
10 20 30 40
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
: ..:.. .:::.:::::::.::: :..
CCDS43 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB8 TIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA
:::::::::::::::. ::.:::::. ..:::::::. :::...:::::. :.::.:.
CCDS43 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB8 DELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NRTWYVQATCATQG
.:: :.: :::::.::.::::::. .:... :.:. :.:..: .:.::.:. :
CCDS43 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQG-CDARS
500 510 520 530 540 550
170 180
pF1KB8 TGLYEGLDWLSNELSKR
CCDS43 VFQIICDQYTGKEVVTEKG
560
>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 (179 aa)
initn: 561 init1: 561 opt: 569 Z-score: 649.0 bits: 126.6 E(32554): 7.9e-30
Smith-Waterman score: 569; 46.1% identity (77.2% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::. .. .. :::.... ....:::: ::::::::.....:.: : :::: ::: . .:
CCDS21 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
: .::.:::. .: :. :. ::. .: ::::.:::::. . .:: ::: ..:: :
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
::.::::::. . :...:... : : :.... :..:: :: : :: .::.:. ..:. :
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
120 130 140 150 160 170
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 576 init1: 545 opt: 564 Z-score: 643.4 bits: 125.6 E(32554): 1.6e-29
Smith-Waterman score: 564; 45.0% identity (77.2% similar) in 180 aa overlap (1-180:1-179)
10 20 30 40 50 60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::: ...:.: :: ... ....:::: ::::::::.. ..:.: : :::: ::: . ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
: .::.:::. .: :. :..::. .:.:::: ::::. . .:: .:: ..:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
.:.::::::. . :. .:.. : :.:.... :..:. :: : :: .::.:...... :
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
120 130 140 150 160 170
180 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:56:58 2016 done: Fri Nov 4 10:56:58 2016
Total Scan time: 1.440 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]