FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8236, 294 aa
  1>>>pF1KB8236 294 - 294 aa - 294 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9570+/- 0.001; mu= 0.0058+/- 0.061
 mean_var=248.2186+/-49.538, 0's: 0 Z-trim(112.9): 26  B-trim: 4 in 1/51
 Lambda= 0.081406
 statistics sampled from 13570 (13592) to 13570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5            ( 294) 1953 241.9 4.3e-64
CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5           ( 259) 1692 211.2 6.7e-55
CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5            ( 265) 1312 166.6 1.8e-41


>>CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5                 (294 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 1264.1  bits: 241.9 E(32554): 4.3e-64
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)

               10        20        30        40        50        60
pF1KB8 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
              190       200       210       220       230       240

              250       260       270       280       290    
pF1KB8 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
              250       260       270       280       290    

>>CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5                (259 aa)
 initn: 1692 init1: 1692 opt: 1692  Z-score: 1099.2  bits: 211.2 E(32554): 6.7e-55
Smith-Waterman score: 1692; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KB8 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
              190       200       210       220       230       240

              250       260       270       280       290    
pF1KB8 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
       :::::::::::::::::                                     
CCDS43 PSSVEDIKAKMQASIEKAH                                   
              250                                            

>>CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5                 (265 aa)
 initn: 1287 init1: 1287 opt: 1312  Z-score: 857.8  bits: 166.6 E(32554): 1.8e-41
Smith-Waterman score: 1697; 90.1% identity (90.1% similar) in 294 aa overlap (1-294:1-265)

               10        20        30        40        50        60
pF1KB8 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG
       ::::::::::::::                             :::::::::::::::::
CCDS43 FDDEEAEEKAPVKK-----------------------------GQESFKKQEKTPKTPKG
              190                                    200       210 

              250       260       270       280       290    
pF1KB8 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
             220       230       240       250       260     




294 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:50:48 2016 done: Fri Nov  4 10:50:49 2016
 Total Scan time:  2.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]