FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8234, 258 aa
  1>>>pF1KB8234 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8758+/-0.000265; mu= 9.3591+/- 0.017
 mean_var=118.8193+/-24.462, 0's: 0 Z-trim(123.1): 5  B-trim: 0 in 0/58
 Lambda= 0.117660
 statistics sampled from 42245 (42251) to 42245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.495), width:  16
 Scan time:  7.160

The best scores are:                                      opt bits E(85289)
NP_054765 (OMIM: 611982) 28S ribosomal protein S18 ( 258) 1820 318.7 6.4e-87


>>NP_054765 (OMIM: 611982) 28S ribosomal protein S18b, m  (258 aa)
 initn: 1820 init1: 1820 opt: 1820  Z-score: 1681.5  bits: 318.7 E(85289): 6.4e-87
Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB8 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP
              190       200       210       220       230       240

              250        
pF1KB8 RTPAEASSTGQTGPQSAL
       ::::::::::::::::::
NP_054 RTPAEASSTGQTGPQSAL
              250        




258 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:01:06 2016 done: Fri Nov  4 22:01:07 2016
 Total Scan time:  7.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]