FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8234, 258 aa
  1>>>pF1KB8234 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4007+/-0.000638; mu= 12.2359+/- 0.039
 mean_var=115.1308+/-23.115, 0's: 0 Z-trim(115.4): 5  B-trim: 0 in 0/53
 Lambda= 0.119530
 statistics sampled from 16004 (16009) to 16004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS4682.1 MRPS18B gene_id:28973|Hs108|chr6        ( 258) 1820 323.5   9e-89


>>CCDS4682.1 MRPS18B gene_id:28973|Hs108|chr6             (258 aa)
 initn: 1820 init1: 1820 opt: 1820  Z-score: 1707.2  bits: 323.5 E(32554): 9e-89
Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB8 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP
              190       200       210       220       230       240

              250        
pF1KB8 RTPAEASSTGQTGPQSAL
       ::::::::::::::::::
CCDS46 RTPAEASSTGQTGPQSAL
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:01:06 2016 done: Fri Nov  4 22:01:06 2016
 Total Scan time:  2.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]