FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8225, 142 aa
  1>>>pF1KB8225 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7430+/-0.000821; mu= 10.7424+/- 0.050
 mean_var=89.2060+/-17.521, 0's: 0 Z-trim(107.9): 16  B-trim: 0 in 0/53
 Lambda= 0.135793
 statistics sampled from 9834 (9840) to 9834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.240

The best scores are:                                      opt bits E(32554)
CCDS7490.1 BLOC1S2 gene_id:282991|Hs108|chr10      ( 142)  873 180.2 3.7e-46
CCDS73179.1 BLOC1S2 gene_id:282991|Hs108|chr10     (  95)  520 110.9 1.8e-25


>>CCDS7490.1 BLOC1S2 gene_id:282991|Hs108|chr10           (142 aa)
 initn: 873 init1: 873 opt: 873  Z-score: 942.1  bits: 180.2 E(32554): 3.7e-46
Smith-Waterman score: 873; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB8 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
               70        80        90       100       110       120

              130       140  
pF1KB8 AAYKLDAYSKKLEAKYKKLEKR
       ::::::::::::::::::::::
CCDS74 AAYKLDAYSKKLEAKYKKLEKR
              130       140  

>>CCDS73179.1 BLOC1S2 gene_id:282991|Hs108|chr10          (95 aa)
 initn: 520 init1: 520 opt: 520  Z-score: 570.8  bits: 110.9 E(32554): 1.8e-25
Smith-Waterman score: 520; 100.0% identity (100.0% similar) in 85 aa overlap (58-142:11-95)

        30        40        50        60        70        80       
pF1KB8 EAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINI
                                     ::::::::::::::::::::::::::::::
CCDS73                     MRLPRKSLEVATSEDYKLLENMNKLTSLKYLEMKDIAINI
                                   10        20        30        40

        90       100       110       120       130       140  
pF1KB8 SRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
               50        60        70        80        90     




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:43:46 2016 done: Fri Nov  4 10:43:46 2016
 Total Scan time:  1.240 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]