Result of FASTA (omim) for
pF1KB8216
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8216, 215 aa
1>>>pF1KB8216 215 - 215 aa - 215 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7658+/-0.000348; mu= 9.0034+/- 0.022
mean_var=119.9176+/-23.718, 0's: 0 Z-trim(117.6): 30 B-trim: 533 in 1/53
Lambda= 0.117120
statistics sampled from 29725 (29755) to 29725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.349), width: 16
Scan time: 5.140
The best scores are: opt bits E(85289)
NP_001307122 (OMIM: 601234) nascent polypeptide-as ( 215) 1310 231.5 7.9e-61
NP_005585 (OMIM: 601234) nascent polypeptide-assoc ( 215) 1310 231.5 7.9e-61
NP_001106673 (OMIM: 601234) nascent polypeptide-as ( 215) 1310 231.5 7.9e-61
NP_001106672 (OMIM: 601234) nascent polypeptide-as ( 215) 1310 231.5 7.9e-61
NP_001307123 (OMIM: 601234) nascent polypeptide-as ( 219) 1287 227.7 1.2e-59
XP_006719483 (OMIM: 601234) PREDICTED: nascent pol ( 219) 1287 227.7 1.2e-59
XP_006719481 (OMIM: 601234) PREDICTED: nascent pol ( 219) 1287 227.7 1.2e-59
NP_954984 (OMIM: 609274) nascent polypeptide-assoc ( 215) 1177 209.1 4.6e-54
NP_001106674 (OMIM: 601234) nascent polypeptide-as ( 925) 1181 210.2 9.1e-54
XP_011536691 (OMIM: 601234) PREDICTED: nascent pol (2078) 1181 210.4 1.7e-53
XP_016874826 (OMIM: 601234) PREDICTED: nascent pol ( 940) 1158 206.3 1.4e-52
XP_006719476 (OMIM: 601234) PREDICTED: nascent pol (2082) 1158 206.5 2.6e-52
XP_006719475 (OMIM: 601234) PREDICTED: nascent pol (2082) 1158 206.5 2.6e-52
XP_006719477 (OMIM: 601234) PREDICTED: nascent pol (2082) 1158 206.5 2.6e-52
>>NP_001307122 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1213.1 bits: 231.5 E(85289): 7.9e-61
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::::::
NP_001 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
190 200 210
>>NP_005585 (OMIM: 601234) nascent polypeptide-associate (215 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1213.1 bits: 231.5 E(85289): 7.9e-61
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::::::
NP_005 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
190 200 210
>>NP_001106673 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1213.1 bits: 231.5 E(85289): 7.9e-61
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::::::
NP_001 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
190 200 210
>>NP_001106672 (OMIM: 601234) nascent polypeptide-associ (215 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1213.1 bits: 231.5 E(85289): 7.9e-61
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::::::
NP_001 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
190 200 210
>>NP_001307123 (OMIM: 601234) nascent polypeptide-associ (219 aa)
initn: 1287 init1: 1287 opt: 1287 Z-score: 1192.0 bits: 227.7 E(85289): 1.2e-59
Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::
NP_001 IELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
190 200 210
>>XP_006719483 (OMIM: 601234) PREDICTED: nascent polypep (219 aa)
initn: 1287 init1: 1287 opt: 1287 Z-score: 1192.0 bits: 227.7 E(85289): 1.2e-59
Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::
XP_006 IELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
190 200 210
>>XP_006719481 (OMIM: 601234) PREDICTED: nascent polypep (219 aa)
initn: 1287 init1: 1287 opt: 1287 Z-score: 1192.0 bits: 227.7 E(85289): 1.2e-59
Smith-Waterman score: 1287; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
:::::::::::::::::::::::::::::::
XP_006 IELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
190 200 210
>>NP_954984 (OMIM: 609274) nascent polypeptide-associate (215 aa)
initn: 1240 init1: 1177 opt: 1177 Z-score: 1091.6 bits: 209.1 E(85289): 4.6e-54
Smith-Waterman score: 1177; 90.2% identity (96.3% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
:::::::::::::::::: :::::::: ::: :::: .:::::::.:::.: :.::::::
NP_954 MPGEATETVPATEQELPQSQAETGSGTASDSGESVPGIEEQDSTQTTTQKAWLVAAAEID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
::::.:::::::::.:::::::::: :::::::::: ::::::::::: :::::::::.:
NP_954 EEPVGKAKQSRSEKRARKAMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
::::::::.::::::::::::::.::::::.:::::::::::::::::::::::::::::
NP_954 IVFGEAKIQDLSQQAQLAAAEKFRVQGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKD
130 140 150 160 170 180
190 200 210
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
..::::::::::::::::::::::::::::::::.
NP_954 VKLVMSQANVSRAKAVRALKNNSNDIVNAIMELTV
190 200 210
>>NP_001106674 (OMIM: 601234) nascent polypeptide-associ (925 aa)
initn: 1176 init1: 1176 opt: 1181 Z-score: 1086.3 bits: 210.2 E(85289): 9.1e-54
Smith-Waterman score: 1181; 92.1% identity (93.9% similar) in 214 aa overlap (2-215:712-925)
10 20 30
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDS
: : ::. . : . . ::::::::
NP_001 ADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDS
690 700 710 720 730 740
40 50 60 70 80 90
pF1KB8 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
750 760 770 780 790 800
100 110 120 130 140 150
pF1KB8 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
810 820 830 840 850 860
160 170 180 190 200 210
pF1KB8 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
870 880 890 900 910 920
pF1KB8 ELTM
::::
NP_001 ELTM
>>XP_011536691 (OMIM: 601234) PREDICTED: nascent polypep (2078 aa)
initn: 1176 init1: 1176 opt: 1181 Z-score: 1081.3 bits: 210.4 E(85289): 1.7e-53
Smith-Waterman score: 1181; 92.1% identity (93.9% similar) in 214 aa overlap (2-215:1865-2078)
10 20 30
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDS
: : ::. . : . . ::::::::
XP_011 ADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDS
1840 1850 1860 1870 1880 1890
40 50 60 70 80 90
pF1KB8 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
1900 1910 1920 1930 1940 1950
100 110 120 130 140 150
pF1KB8 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
1960 1970 1980 1990 2000 2010
160 170 180 190 200 210
pF1KB8 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
2020 2030 2040 2050 2060 2070
pF1KB8 ELTM
::::
XP_011 ELTM
215 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:38:59 2016 done: Fri Nov 4 10:39:00 2016
Total Scan time: 5.140 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]