FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8216, 215 aa
  1>>>pF1KB8216 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6747+/-0.000863; mu= 9.3519+/- 0.053
 mean_var=114.8460+/-22.067, 0's: 0 Z-trim(109.9): 14  B-trim: 0 in 0/53
 Lambda= 0.119679
 statistics sampled from 11177 (11186) to 11177 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.344), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS31837.1 NACA gene_id:4666|Hs108|chr12          ( 215) 1310 236.3 1.1e-62
CCDS11630.1 NACA2 gene_id:342538|Hs108|chr17       ( 215) 1177 213.3 9.4e-56
CCDS44925.2 NACA gene_id:4666|Hs108|chr12          ( 925) 1181 214.4 1.9e-55
CCDS47582.1 NACAD gene_id:23148|Hs108|chr7         (1562)  790 147.0 5.9e-35


>>CCDS31837.1 NACA gene_id:4666|Hs108|chr12               (215 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1238.6  bits: 236.3 E(32554): 1.1e-62
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
              130       140       150       160       170       180

              190       200       210     
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
       :::::::::::::::::::::::::::::::::::
CCDS31 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
              190       200       210     

>>CCDS11630.1 NACA2 gene_id:342538|Hs108|chr17            (215 aa)
 initn: 1240 init1: 1177 opt: 1177  Z-score: 1114.4  bits: 213.3 E(32554): 9.4e-56
Smith-Waterman score: 1177; 90.2% identity (96.3% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB8 MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
       :::::::::::::::::: :::::::: ::: :::: .:::::::.:::.: :.::::::
CCDS11 MPGEATETVPATEQELPQSQAETGSGTASDSGESVPGIEEQDSTQTTTQKAWLVAAAEID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY
       ::::.:::::::::.:::::::::: :::::::::: ::::::::::: :::::::::.:
CCDS11 EEPVGKAKQSRSEKRARKAMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKD
       ::::::::.::::::::::::::.::::::.:::::::::::::::::::::::::::::
CCDS11 IVFGEAKIQDLSQQAQLAAAEKFRVQGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKD
              130       140       150       160       170       180

              190       200       210     
pF1KB8 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
       ..::::::::::::::::::::::::::::::::.
CCDS11 VKLVMSQANVSRAKAVRALKNNSNDIVNAIMELTV
              190       200       210     

>>CCDS44925.2 NACA gene_id:4666|Hs108|chr12               (925 aa)
 initn: 1176 init1: 1176 opt: 1181  Z-score: 1109.1  bits: 214.4 E(32554): 1.9e-55
Smith-Waterman score: 1181; 92.1% identity (93.9% similar) in 214 aa overlap (2-215:712-925)

                                            10        20        30 
pF1KB8                              MPGEATETVPATEQELPQPQAETGSGTESDS
                                     :  :   ::.   . :  . . ::::::::
CCDS44 ADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDS
             690       700       710       720       730       740 

              40        50        60        70        80        90 
pF1KB8 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGV
             750       760       770       780       790       800 

             100       110       120       130       140       150 
pF1KB8 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVS
             810       820       830       840       850       860 

             160       170       180       190       200       210 
pF1KB8 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM
             870       880       890       900       910       920 

           
pF1KB8 ELTM
       ::::
CCDS44 ELTM
           

>>CCDS47582.1 NACAD gene_id:23148|Hs108|chr7              (1562 aa)
 initn: 587 init1: 546 opt: 790  Z-score: 741.0  bits: 147.0 E(32554): 5.9e-35
Smith-Waterman score: 790; 66.3% identity (80.3% similar) in 208 aa overlap (15-215:1356-1562)

                               10        20        30         40   
pF1KB8                 MPGEATETVPATEQELPQPQAETGSGTESDSD-ESVPELEEQDS
                                     :  .:.:  ::: .:::  ::  ::.::: 
CCDS47 CQVPPPSGPQSPAGPQGLSAPEQQEDEDSLEEDSPRA-LGSGQHSDSHGESSAELDEQDI
        1330      1340      1350      1360       1370      1380    

            50        60        70        80        90       100   
pF1KB8 TQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL
           : :    : :  .:: ..::::::::::::::::::::::. ::::.::.::::::
CCDS47 LAPQTVQCPAQAPAGGSEETIAKAKQSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNIL
         1390      1400      1410      1420      1430      1440    

           110       120       130       140       150       160   
pF1KB8 FVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTV-
       :::.::::.::::::::.:::::::::::::.. :::::::: .:  . . :..  : : 
CCDS47 FVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPESAPRPRVR
         1450      1460      1470      1480      1490      1500    

                 170       180       190       200       210     
pF1KB8 -----QEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
            .:: :::::::.:.:..::::::.:::::::::::::..: .:::::::::::
CCDS47 LECKEEEEEEEEEVDEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELTM
         1510      1520      1530      1540      1550      1560  




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:38:58 2016 done: Fri Nov  4 10:38:59 2016
 Total Scan time:  1.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]