Result of FASTA (ccds) for
pF1KB8212
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8212, 134 aa
1>>>pF1KB8212 134 - 134 aa - 134 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5557+/-0.000641; mu= 11.3463+/- 0.039
mean_var=79.9212+/-15.670, 0's: 0 Z-trim(112.3): 10 B-trim: 0 in 0/52
Lambda= 0.143464
statistics sampled from 13063 (13071) to 13063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.402), width: 16
Scan time: 1.620
The best scores are: opt bits E(32554)
CCDS4406.1 SNCB gene_id:6620|Hs108|chr5 ( 134) 846 183.4 3.6e-47
CCDS83048.1 SNCB gene_id:6620|Hs108|chr5 ( 120) 600 132.5 7e-32
CCDS3634.1 SNCA gene_id:6622|Hs108|chr4 ( 140) 459 103.3 4.8e-23
CCDS43252.1 SNCA gene_id:6622|Hs108|chr4 ( 112) 383 87.5 2.2e-18
CCDS7380.1 SNCG gene_id:6623|Hs108|chr10 ( 127) 342 79.1 8.7e-16
CCDS81483.1 SNCG gene_id:6623|Hs108|chr10 ( 126) 266 63.3 4.7e-11
>>CCDS4406.1 SNCB gene_id:6620|Hs108|chr5 (134 aa)
initn: 846 init1: 846 opt: 846 Z-score: 960.3 bits: 183.4 E(32554): 3.6e-47
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
70 80 90 100 110 120
130
pF1KB8 DPPQEEYQEYEPEA
::::::::::::::
CCDS44 DPPQEEYQEYEPEA
130
>>CCDS83048.1 SNCB gene_id:6620|Hs108|chr5 (120 aa)
initn: 747 init1: 521 opt: 600 Z-score: 685.8 bits: 132.5 E(32554): 7e-32
Smith-Waterman score: 723; 89.6% identity (89.6% similar) in 134 aa overlap (1-134:1-120)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
:::::::::::::::::::::::::::::::::::::::: ::::::
CCDS83 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYV--------------VAEKTK
10 20 30 40
70 80 90 100 110 120
pF1KB8 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
50 60 70 80 90 100
130
pF1KB8 DPPQEEYQEYEPEA
::::::::::::::
CCDS83 DPPQEEYQEYEPEA
110 120
>>CCDS3634.1 SNCA gene_id:6622|Hs108|chr4 (140 aa)
initn: 602 init1: 383 opt: 459 Z-score: 527.1 bits: 103.3 E(32554): 4.8e-23
Smith-Waterman score: 496; 61.6% identity (79.5% similar) in 146 aa overlap (1-134:1-140)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
::::::::: ::::::::::::::::.::: :::::::::::::.::::.:::.::::::
CCDS36 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100
pF1KB8 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE
::....:::: .: ::.::::::.::.... : :: : .: ..:
CCDS36 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE
70 80 90 100 110
110 120 130
pF1KB8 PL-MEPEGESYEDPPQEEYQEYEPEA
. ..:..:.:: : .: ::.:::::
CCDS36 DMPVDPDNEAYEMPSEEGYQDYEPEA
120 130 140
>>CCDS43252.1 SNCA gene_id:6622|Hs108|chr4 (112 aa)
initn: 518 init1: 383 opt: 383 Z-score: 443.5 bits: 87.5 E(32554): 2.2e-18
Smith-Waterman score: 412; 66.7% identity (81.1% similar) in 111 aa overlap (1-96:1-111)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
::::::::: ::::::::::::::::.::: :::::::::::::.::::.:::.::::::
CCDS43 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
10 20 30 40 50 60
70 80 90 100
pF1KB8 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPT----DLKPEEVAQEAAEE
::....:::: .: ::.::::::.::.... : .::
CCDS43 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKEGYQDYEPEA
70 80 90 100 110
110 120 130
pF1KB8 PLIEPLMEPEGESYEDPPQEEYQEYEPEA
>>CCDS7380.1 SNCG gene_id:6623|Hs108|chr10 (127 aa)
initn: 570 init1: 341 opt: 342 Z-score: 396.9 bits: 79.1 E(32554): 8.7e-16
Smith-Waterman score: 362; 54.5% identity (73.5% similar) in 132 aa overlap (1-121:1-127)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
:::: ::.:.::::::.:.::::::::::::::::::.:::.::.:.:::.:.:::::::
CCDS73 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
10 20 30 40 50 60
70 80 90 100
pF1KB8 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE
:::. .. :: :. : :::...:.:..: ::.: ::. :
CCDS73 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKE----DLRPSAPQQEGEASKEKE
70 80 90 100 110
110 120 130
pF1KB8 PLMEPEGESYEDPPQEEYQEYEPEA
. : :..: :
CCDS73 EVAE-EAQSGGD
120
>>CCDS81483.1 SNCG gene_id:6623|Hs108|chr10 (126 aa)
initn: 266 init1: 266 opt: 266 Z-score: 311.9 bits: 63.3 E(32554): 4.7e-11
Smith-Waterman score: 266; 79.6% identity (98.1% similar) in 54 aa overlap (1-54:1-54)
10 20 30 40 50 60
pF1KB8 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
:::: ::.:.::::::.:.::::::::::::::::::.:::.::.:.:::.:.:
CCDS81 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSGLPWGW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EQASHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYE
CCDS81 GWGGGQPVSSHSGREDQGAGQRRERGCGEQRQHCGHQDRGGGGEHRGHLRGGAQGGLEAI
70 80 90 100 110 120
134 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:37:16 2016 done: Fri Nov 4 10:37:16 2016
Total Scan time: 1.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]