FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8209, 272 aa
  1>>>pF1KB8209 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7855+/-0.000637; mu= 13.7222+/- 0.039
 mean_var=86.6125+/-17.368, 0's: 0 Z-trim(112.8): 6  B-trim: 15 in 1/51
 Lambda= 0.137811
 statistics sampled from 13531 (13535) to 13531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.416), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS4616.1 ABT1 gene_id:29777|Hs108|chr6           ( 272) 1812 369.4 1.6e-102


>>CCDS4616.1 ABT1 gene_id:29777|Hs108|chr6                (272 aa)
 initn: 1812 init1: 1812 opt: 1812  Z-score: 1954.3  bits: 369.4 E(32554): 1.6e-102
Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB8 MEAEESEKAATEQEPLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEAEESEKAATEQEPLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ETDFYLQSVERGQRFLAADGDPARPDGSWTFAQRPTEQELRARKAARPGGRERARLATAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ETDFYLQSVERGQRFLAADGDPARPDGSWTFAQRPTEQELRARKAARPGGRERARLATAQ
              190       200       210       220       230       240

              250       260       270  
pF1KB8 DKARSNKGLLARIFGAPPPSESMEGPSLVRDS
       ::::::::::::::::::::::::::::::::
CCDS46 DKARSNKGLLARIFGAPPPSESMEGPSLVRDS
              250       260       270  




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:35:30 2016 done: Fri Nov  4 10:35:30 2016
 Total Scan time:  2.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]