FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8205, 351 aa
  1>>>pF1KB8205 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3774+/-0.000615; mu= 17.4446+/- 0.037
 mean_var=79.9710+/-15.945, 0's: 0 Z-trim(113.8): 10  B-trim: 576 in 1/51
 Lambda= 0.143419
 statistics sampled from 14401 (14408) to 14401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.443), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS8024.1 ROM1 gene_id:6094|Hs108|chr11           ( 351) 2408 507.0 9.4e-144
CCDS4871.1 PRPH2 gene_id:5961|Hs108|chr6           ( 346)  812 176.8 2.4e-44


>>CCDS8024.1 ROM1 gene_id:6094|Hs108|chr11                (351 aa)
 initn: 2408 init1: 2408 opt: 2408  Z-score: 2694.3  bits: 507.0 E(32554): 9.4e-144
Smith-Waterman score: 2408; 99.7% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS80 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVGLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
              310       320       330       340       350 

>>CCDS4871.1 PRPH2 gene_id:5961|Hs108|chr6                (346 aa)
 initn: 768 init1: 666 opt: 812  Z-score: 909.7  bits: 176.8 E(32554): 2.4e-44
Smith-Waterman score: 812; 36.0% identity (69.8% similar) in 344 aa overlap (4-343:3-343)

               10        20        30        40        50        60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
          .: . .  . :..:::::::..:. .::: .:.  .  : ..::. .  .  : .  
CCDS48  MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNS-ESH
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
        .:.. .. :...   . ..      .:. : :  :.  : : :.  .  .  :..::: 
CCDS48 FVPNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALC
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
         : : :::...: .:: ... .:.::..::.:  :. .: ::....::: .:..::: .
CCDS48 CFL-LRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEI
      120        130       140       150       160       170       

              190       200       210       220       230       240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
       ::.:.:::: ....: :::.:::.: ::.:::::::::: :::::.: ..... ::  .:
CCDS48 QWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYD
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
        .  . :::..::. .:: . ..: ...: .  . .:... . .:::::::.:.:...  
CCDS48 HQTEELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPE
       240       250       260       270       280       290       

              310       320           330       340       350 
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQG----GVACRPAPEEAPPGEAPPKEDLSEA
       .. .:.::.:.  .. .  : :.:..    : . .   : :  :.::        
CCDS48 ESESESQGWLLERSVPETWK-AFLESVKKLGKGNQVEAEGADAGQAPEAG     
       300       310        320       330       340           




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:32:23 2016 done: Fri Nov  4 10:32:24 2016
 Total Scan time:  2.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]