Result of FASTA (omim) for
pF1KB8197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8197, 165 aa
1>>>pF1KB8197 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8537+/-0.000352; mu= 14.2756+/- 0.022
mean_var=61.8441+/-12.549, 0's: 0 Z-trim(113.9): 81 B-trim: 0 in 0/55
Lambda= 0.163089
statistics sampled from 23369 (23463) to 23369 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.275), width: 16
Scan time: 4.400
The best scores are: opt bits E(85289)
NP_066953 (OMIM: 123840) peptidyl-prolyl cis-trans ( 165) 1130 274.1 7.1e-74
NP_001137504 (OMIM: 608608) peptidyl-prolyl cis-tr ( 164) 954 232.7 2.1e-61
NP_005720 (OMIM: 604486) peptidyl-prolyl cis-trans ( 207) 893 218.4 5.2e-57
XP_016855541 (OMIM: 602435) PREDICTED: peptidyl-pr ( 217) 790 194.2 1.1e-49
NP_006103 (OMIM: 602435) peptidyl-prolyl cis-trans ( 301) 790 194.3 1.4e-49
XP_006710353 (OMIM: 602435) PREDICTED: peptidyl-pr ( 288) 774 190.5 1.8e-48
XP_011509880 (OMIM: 601181,608033) PREDICTED: E3 S (2281) 773 190.9 1.1e-47
XP_005264064 (OMIM: 601181,608033) PREDICTED: E3 S (2282) 773 190.9 1.1e-47
XP_011509878 (OMIM: 601181,608033) PREDICTED: E3 S (3199) 773 191.0 1.4e-47
NP_006258 (OMIM: 601181,608033) E3 SUMO-protein li (3224) 773 191.0 1.4e-47
XP_005264061 (OMIM: 601181,608033) PREDICTED: E3 S (3232) 773 191.0 1.4e-47
XP_005264062 (OMIM: 601181,608033) PREDICTED: E3 S (3232) 773 191.0 1.4e-47
XP_005264060 (OMIM: 601181,608033) PREDICTED: E3 S (3250) 773 191.0 1.4e-47
XP_011509877 (OMIM: 601181,608033) PREDICTED: E3 S (3257) 773 191.0 1.4e-47
XP_005264059 (OMIM: 601181,608033) PREDICTED: E3 S (3258) 773 191.0 1.4e-47
NP_001287910 (OMIM: 123840) peptidyl-prolyl cis-tr ( 105) 720 177.5 5.4e-45
NP_982281 (OMIM: 602435) peptidyl-prolyl cis-trans ( 296) 716 176.9 2.4e-44
XP_011538803 (OMIM: 602435) PREDICTED: peptidyl-pr ( 230) 713 176.1 3.2e-44
XP_016855540 (OMIM: 602435) PREDICTED: peptidyl-pr ( 314) 713 176.2 4e-44
NP_001181936 (OMIM: 602435) peptidyl-prolyl cis-tr ( 314) 713 176.2 4e-44
NP_000933 (OMIM: 123841,259440) peptidyl-prolyl ci ( 216) 699 172.8 2.9e-43
NP_001306222 (OMIM: 602435) peptidyl-prolyl cis-tr ( 283) 700 173.1 3.1e-43
XP_006710352 (OMIM: 602435) PREDICTED: peptidyl-pr ( 301) 697 172.4 5.3e-43
XP_005269436 (OMIM: 604486) PREDICTED: peptidyl-pr ( 201) 671 166.2 2.7e-41
NP_005029 (OMIM: 601753) peptidyl-prolyl cis-trans ( 370) 659 163.5 3.1e-40
NP_006338 (OMIM: 606095) peptidyl-prolyl cis-trans ( 177) 620 154.1 9.9e-38
XP_016855546 (OMIM: 606095) PREDICTED: peptidyl-pr ( 177) 620 154.1 9.9e-38
XP_005270419 (OMIM: 606095) PREDICTED: peptidyl-pr ( 177) 620 154.1 9.9e-38
NP_000934 (OMIM: 123842) peptidyl-prolyl cis-trans ( 212) 609 151.6 6.9e-37
XP_016860791 (OMIM: 606093) PREDICTED: peptidyl-pr ( 272) 558 139.7 3.4e-33
XP_005247023 (OMIM: 606093) PREDICTED: peptidyl-pr ( 754) 558 140.0 7.7e-33
XP_005247024 (OMIM: 606093) PREDICTED: peptidyl-pr ( 754) 558 140.0 7.7e-33
NP_004783 (OMIM: 606093) peptidyl-prolyl cis-trans ( 754) 558 140.0 7.7e-33
XP_016861963 (OMIM: 161565) PREDICTED: NK-tumor re (1435) 547 137.6 7.7e-32
XP_006713234 (OMIM: 161565) PREDICTED: NK-tumor re (1436) 547 137.6 7.7e-32
NP_005376 (OMIM: 161565) NK-tumor recognition prot (1462) 547 137.6 7.8e-32
XP_005265230 (OMIM: 161565) PREDICTED: NK-tumor re (1463) 547 137.6 7.8e-32
XP_016855548 (OMIM: 606095) PREDICTED: peptidyl-pr ( 134) 452 114.5 6.3e-26
NP_001317439 (OMIM: 606095) peptidyl-prolyl cis-tr ( 134) 452 114.5 6.3e-26
XP_016855547 (OMIM: 606095) PREDICTED: peptidyl-pr ( 134) 452 114.5 6.3e-26
NP_057143 (OMIM: 601301) peptidyl-prolyl cis-trans ( 166) 432 109.9 2e-24
XP_011509660 (OMIM: 615811) PREDICTED: peptidyl-pr ( 161) 392 100.5 1.3e-21
XP_016859844 (OMIM: 615811) PREDICTED: peptidyl-pr ( 161) 392 100.5 1.3e-21
NP_570981 (OMIM: 615811) peptidyl-prolyl cis-trans ( 161) 392 100.5 1.3e-21
XP_005246709 (OMIM: 615811) PREDICTED: peptidyl-pr ( 161) 392 100.5 1.3e-21
XP_016859845 (OMIM: 615811) PREDICTED: peptidyl-pr ( 161) 392 100.5 1.3e-21
XP_016884195 (OMIM: 607588) PREDICTED: peptidyl-pr ( 266) 367 94.7 1.1e-19
XP_016884194 (OMIM: 607588) PREDICTED: peptidyl-pr ( 362) 367 94.8 1.5e-19
XP_011528351 (OMIM: 607588) PREDICTED: peptidyl-pr ( 438) 367 94.9 1.7e-19
XP_011528353 (OMIM: 607588) PREDICTED: peptidyl-pr ( 438) 367 94.9 1.7e-19
>>NP_066953 (OMIM: 123840) peptidyl-prolyl cis-trans iso (165 aa)
initn: 1130 init1: 1130 opt: 1130 Z-score: 1447.3 bits: 274.1 E(85289): 7.1e-74
Smith-Waterman score: 1130; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE
70 80 90 100 110 120
130 140 150 160
pF1KB8 WLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
:::::::::::::::::::::::::::::::::::::::::::::
NP_066 WLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
130 140 150 160
>>NP_001137504 (OMIM: 608608) peptidyl-prolyl cis-trans (164 aa)
initn: 972 init1: 954 opt: 954 Z-score: 1223.5 bits: 232.7 E(85289): 2.1e-61
Smith-Waterman score: 954; 84.8% identity (94.5% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF
::: .:::.:. ::.::::.:..:::::.::::::::::::::::: :::::::::::::
NP_001 MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTE
::::::::: :::: ::::::::.:::.: :::: ::::::::::::::::::::.::::
NP_001 MCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTE
70 80 90 100 110 120
130 140 150 160
pF1KB8 WLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
:::::::.:::::: .:::::::.:: ::.:::::::::::::.
NP_001 WLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF
130 140 150 160
>>NP_005720 (OMIM: 604486) peptidyl-prolyl cis-trans iso (207 aa)
initn: 893 init1: 893 opt: 893 Z-score: 1144.5 bits: 218.4 E(85289): 5.2e-57
Smith-Waterman score: 893; 76.5% identity (91.4% similar) in 162 aa overlap (3-164:45-206)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
:: :..:. ..:.::::: .:: :: ::::
NP_005 SVPRSVPLRLPAARACSKGSGDPSSSSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKT
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::::: ::::::::::: :::.::.::::.:::: ::::::::::: .: :::: :::
NP_005 AENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
.:::.::::::::::::::::::: ::.::::::::::.:::::..:. .: :::..:.:
NP_005 VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRT
140 150 160 170 180 190
160
pF1KB8 SKKITIADCGQLE
::::.:.:::::
NP_005 SKKIVITDCGQLS
200
>>XP_016855541 (OMIM: 602435) PREDICTED: peptidyl-prolyl (217 aa)
initn: 821 init1: 790 opt: 790 Z-score: 1013.3 bits: 194.2 E(85289): 1.1e-49
Smith-Waterman score: 790; 67.7% identity (85.7% similar) in 161 aa overlap (3-163:55-215)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
:: :..:: . ..: ::... : .: :: :
XP_016 TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::: : : :::::.::: :::::: ::::::::: :::::::::::.::.::::::::
XP_016 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.:::::.::::::::::. ::.::::::::::.: ::..... .: ::..::
XP_016 TGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKP
150 160 170 180 190 200
160
pF1KB8 SKKITIADCGQLE
..:. :::::.
XP_016 KQKVIIADCGEYV
210
>>NP_006103 (OMIM: 602435) peptidyl-prolyl cis-trans iso (301 aa)
initn: 806 init1: 790 opt: 790 Z-score: 1011.3 bits: 194.3 E(85289): 1.4e-49
Smith-Waterman score: 790; 67.7% identity (85.7% similar) in 161 aa overlap (3-163:139-299)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
:: :..:: . ..: ::... : .: :: :
NP_006 TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::: : : :::::.::: :::::: ::::::::: :::::::::::.::.::::::::
NP_006 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH
170 180 190 200 210 220
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.:::::.::::::::::. ::.::::::::::.: ::..... .: ::..::
NP_006 TGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKP
230 240 250 260 270 280
160
pF1KB8 SKKITIADCGQLE
..:. :::::.
NP_006 KQKVIIADCGEYV
290 300
>>XP_006710353 (OMIM: 602435) PREDICTED: peptidyl-prolyl (288 aa)
initn: 781 init1: 765 opt: 774 Z-score: 991.2 bits: 190.5 E(85289): 1.8e-48
Smith-Waterman score: 774; 67.7% identity (86.1% similar) in 158 aa overlap (6-163:129-286)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAEN
:..:: . ..: ::... : .: :: ::::
XP_006 DDWLKKFSGKTLEENKEEEGSEPPKAETQEVYMDIKIGNKPAGRIQMLLRSDVVPMTAEN
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB8 FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP
:: : : :::::.::: :::::: ::::::::: :::::::::::.::.:::::::::::
XP_006 FRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB8 GILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKK
:.:::::.::::::::::. ::.::::::::::.: ::..... .: ::..:: ..:
XP_006 GLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK
220 230 240 250 260 270
160
pF1KB8 ITIADCGQLE
. :::::.
XP_006 VIIADCGEYV
280
>>XP_011509880 (OMIM: 601181,608033) PREDICTED: E3 SUMO- (2281 aa)
initn: 811 init1: 773 opt: 773 Z-score: 977.1 bits: 190.9 E(85289): 1.1e-47
Smith-Waterman score: 773; 66.7% identity (87.7% similar) in 162 aa overlap (3-164:2120-2281)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
::.::::. .:::::::...:::.. ::.:
XP_011 FKKTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRT
2090 2100 2110 2120 2130 2140
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::::: :::::::.:.: :::.:: :.:::::.:.:.::::.::::.::::::: .::
XP_011 AENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKH
2150 2160 2170 2180 2190 2200
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.::::: : :::.::: : :.: :: :::::: ::.::. :. .: ::: .:..
XP_011 TGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV
2210 2220 2230 2240 2250 2260
160
pF1KB8 SKKITIADCGQLE
..:::..:::.
XP_011 CRRITITECGQI
2270 2280
>>XP_005264064 (OMIM: 601181,608033) PREDICTED: E3 SUMO- (2282 aa)
initn: 811 init1: 773 opt: 773 Z-score: 977.1 bits: 190.9 E(85289): 1.1e-47
Smith-Waterman score: 773; 66.7% identity (87.7% similar) in 162 aa overlap (3-164:2121-2282)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
::.::::. .:::::::...:::.. ::.:
XP_005 FKKTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRT
2100 2110 2120 2130 2140 2150
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::::: :::::::.:.: :::.:: :.:::::.:.:.::::.::::.::::::: .::
XP_005 AENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKH
2160 2170 2180 2190 2200 2210
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.::::: : :::.::: : :.: :: :::::: ::.::. :. .: ::: .:..
XP_005 TGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV
2220 2230 2240 2250 2260 2270
160
pF1KB8 SKKITIADCGQLE
..:::..:::.
XP_005 CRRITITECGQI
2280
>>XP_011509878 (OMIM: 601181,608033) PREDICTED: E3 SUMO- (3199 aa)
initn: 801 init1: 773 opt: 773 Z-score: 975.0 bits: 191.0 E(85289): 1.4e-47
Smith-Waterman score: 773; 66.7% identity (87.7% similar) in 162 aa overlap (3-164:3038-3199)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
::.::::. .:::::::...:::.. ::.:
XP_011 FKKTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRT
3010 3020 3030 3040 3050 3060
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::::: :::::::.:.: :::.:: :.:::::.:.:.::::.::::.::::::: .::
XP_011 AENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKH
3070 3080 3090 3100 3110 3120
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.::::: : :::.::: : :.: :: :::::: ::.::. :. .: ::: .:..
XP_011 TGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV
3130 3140 3150 3160 3170 3180
160
pF1KB8 SKKITIADCGQLE
..:::..:::.
XP_011 CRRITITECGQI
3190
>>NP_006258 (OMIM: 601181,608033) E3 SUMO-protein ligase (3224 aa)
initn: 801 init1: 773 opt: 773 Z-score: 975.0 bits: 191.0 E(85289): 1.4e-47
Smith-Waterman score: 773; 66.7% identity (87.7% similar) in 162 aa overlap (3-164:3063-3224)
10 20 30
pF1KB8 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKT
::.::::. .:::::::...:::.. ::.:
NP_006 FKKTFEECQQNLMKLQKGHVSLAAELSKETNPVVFFDVCADGEPLGRITMELFSNIVPRT
3040 3050 3060 3070 3080 3090
40 50 60 70 80 90
pF1KB8 AENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKH
::::::: :::::::.:.: :::.:: :.:::::.:.:.::::.::::.::::::: .::
NP_006 AENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKH
3100 3110 3120 3130 3140 3150
100 110 120 130 140 150
pF1KB8 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT
::::.::::: : :::.::: : :.: :: :::::: ::.::. :. .: ::: .:..
NP_006 TGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV
3160 3170 3180 3190 3200 3210
160
pF1KB8 SKKITIADCGQLE
..:::..:::.
NP_006 CRRITITECGQI
3220
165 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:27:54 2016 done: Fri Nov 4 10:27:55 2016
Total Scan time: 4.400 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]