FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8195, 313 aa
  1>>>pF1KB8195 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8371+/-0.000765; mu= 9.0360+/- 0.046
 mean_var=99.6549+/-20.095, 0's: 0 Z-trim(110.8): 52  B-trim: 0 in 0/52
 Lambda= 0.128477
 statistics sampled from 11868 (11920) to 11868 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS12094.1 SGTA gene_id:6449|Hs108|chr19          ( 313) 2043 388.6 3.4e-108
CCDS3988.1 SGTB gene_id:54557|Hs108|chr5           ( 304) 1123 218.1 7.1e-57


>>CCDS12094.1 SGTA gene_id:6449|Hs108|chr19               (313 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 2056.0  bits: 388.6 E(32554): 3.4e-108
Smith-Waterman score: 2043; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KB8 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
              250       260       270       280       290       300

              310   
pF1KB8 SRTPSASNDDQQE
       :::::::::::::
CCDS12 SRTPSASNDDQQE
              310   

>>CCDS3988.1 SGTB gene_id:54557|Hs108|chr5                (304 aa)
 initn: 1152 init1: 736 opt: 1123  Z-score: 1134.6  bits: 218.1 E(32554): 7.1e-57
Smith-Waterman score: 1123; 58.3% identity (81.4% similar) in 312 aa overlap (1-311:1-303)

               10        20        30        40        50        60
pF1KB8 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
       :.. :.:.::.:.::..: .    .:: :::::::::::::.: .. ::. ::. : : :
CCDS39 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
       .:    :..   .:.   . . :  :: ..:..:: :::..:: ::. :::  : .::::
CCDS39 MF----TSSFCKNDVLPLSNSVP--EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIEL
                   70          80        90       100       110    

              130       140       150       160       170       180
pF1KB8 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
       .: ::::.:::::: ::::.:. :..:::.:: ::  ::::::::::::..:::  :::.
CCDS39 DPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVT
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KB8 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
        :.:::.:::.:..::::::::: ::::. ::::   :::.:.:.:::.:.:::..::.:
CCDS39 SYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQN
          180       190       200       210       220       230    

              250       260        270       280       290         
pF1KB8 PQIQQLMSGMISGGNNPLGTPGTS-PSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI
       ::.:::::::..   : .: :...  . .::.::::::::::::.::::::::::::..:
CCDS39 PQVQQLMSGMMT---NAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
          240          250       260       270       280       290 

     300       310   
pF1KB8 RSRTPSASNDDQQE
       :::. :.: ...  
CCDS39 RSRSFSSSAEEHS 
             300     




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:25:57 2016 done: Fri Nov  4 10:25:57 2016
 Total Scan time:  2.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]