Result of FASTA (omim) for
pF1KB8194
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8194, 547 aa
1>>>pF1KB8194 547 - 547 aa - 547 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9957+/-0.00041; mu= 20.8649+/- 0.026
mean_var=71.6756+/-14.591, 0's: 0 Z-trim(110.3): 12 B-trim: 0 in 0/54
Lambda= 0.151492
statistics sampled from 18610 (18619) to 18610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.579), E-opt: 0.2 (0.218), width: 16
Scan time: 7.580
The best scores are: opt bits E(85289)
NP_060561 (OMIM: 612722) elongator complex protein ( 547) 3672 812.3 0
NP_001271151 (OMIM: 612722) elongator complex prot ( 533) 3580 792.2 0
XP_016869093 (OMIM: 612722) PREDICTED: elongator c ( 541) 3518 778.7 0
NP_001271149 (OMIM: 612722) elongator complex prot ( 475) 3216 712.6 6.8e-205
NP_001271155 (OMIM: 612722) elongator complex prot ( 455) 3096 686.4 5.1e-197
NP_001271154 (OMIM: 612722) elongator complex prot ( 428) 2795 620.6 3.1e-177
NP_001271153 (OMIM: 612722) elongator complex prot ( 428) 2795 620.6 3.1e-177
XP_006716417 (OMIM: 612722) PREDICTED: elongator c ( 428) 2795 620.6 3.1e-177
>>NP_060561 (OMIM: 612722) elongator complex protein 3 i (547 aa)
initn: 3672 init1: 3672 opt: 3672 Z-score: 4337.3 bits: 812.3 E(85289): 0
Smith-Waterman score: 3672; 100.0% identity (100.0% similar) in 547 aa overlap (1-547:1-547)
10 20 30 40 50 60
pF1KB8 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
490 500 510 520 530 540
pF1KB8 YMVKMLK
:::::::
NP_060 YMVKMLK
>>NP_001271151 (OMIM: 612722) elongator complex protein (533 aa)
initn: 3580 init1: 3580 opt: 3580 Z-score: 4228.8 bits: 792.2 E(85289): 0
Smith-Waterman score: 3580; 100.0% identity (100.0% similar) in 533 aa overlap (15-547:1-533)
10 20 30 40 50 60
pF1KB8 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
10 20 30 40
70 80 90 100 110 120
pF1KB8 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB8 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB8 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
470 480 490 500 510 520
pF1KB8 YMVKMLK
:::::::
NP_001 YMVKMLK
530
>>XP_016869093 (OMIM: 612722) PREDICTED: elongator compl (541 aa)
initn: 3514 init1: 3514 opt: 3518 Z-score: 4155.5 bits: 778.7 E(85289): 0
Smith-Waterman score: 3518; 98.1% identity (99.1% similar) in 535 aa overlap (1-535:1-535)
10 20 30 40 50 60
pF1KB8 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
:::::::::::::::::::::::::::::::::::::::::::: . . .. :.
XP_016 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVDVLGQRQRGGHHRSCS
490 500 510 520 530 540
pF1KB8 YMVKMLK
XP_016 L
>>NP_001271149 (OMIM: 612722) elongator complex protein (475 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 3799.5 bits: 712.6 E(85289): 6.8e-205
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 475 aa overlap (73-547:1-475)
50 60 70 80 90 100
pF1KB8 TKTAAKYGLSAQPRLVDIIAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHI
::::::::::::::::::::::::::::::
NP_001 MPKLKAKPIRTASGIAVVAVMCKPHRCPHI
10 20 30
110 120 130 140 150 160
pF1KB8 SFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 DKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIET
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB8 RPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVV
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB8 AHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB8 SDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVR
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB8 TREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFR
340 350 360 370 380 390
470 480 490 500 510 520
pF1KB8 FELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVIS
400 410 420 430 440 450
530 540
pF1KB8 GVGTRNYYRKIGYRLQGPYMVKMLK
:::::::::::::::::::::::::
NP_001 GVGTRNYYRKIGYRLQGPYMVKMLK
460 470
>>NP_001271155 (OMIM: 612722) elongator complex protein (455 aa)
initn: 3096 init1: 3096 opt: 3096 Z-score: 3658.0 bits: 686.4 E(85289): 5.1e-197
Smith-Waterman score: 3096; 100.0% identity (100.0% similar) in 455 aa overlap (93-547:1-455)
70 80 90 100 110 120
pF1KB8 AVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEY
::::::::::::::::::::::::::::::
NP_001 MCKPHRCPHISFTGNICVYCPGGPDSDFEY
10 20 30
130 140 150 160 170 180
pF1KB8 STQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYR
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB8 DYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTR
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFT
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB8 EFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRV
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB8 YRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVEL
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB8 VRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVV
340 350 360 370 380 390
490 500 510 520 530 540
pF1KB8 PVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYM
400 410 420 430 440 450
pF1KB8 VKMLK
:::::
NP_001 VKMLK
>>NP_001271154 (OMIM: 612722) elongator complex protein (428 aa)
initn: 2792 init1: 2792 opt: 2795 Z-score: 3302.9 bits: 620.6 E(85289): 3.1e-177
Smith-Waterman score: 2795; 98.8% identity (98.8% similar) in 424 aa overlap (125-547:5-428)
100 110 120 130 140 150
pF1KB8 KPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYE-PTSMRAIRARYDPFLQTRHRIE
: : : ::::::::::::::::::::::
NP_001 MSTHQFYRKYMCPTSMRAIRARYDPFLQTRHRIE
10 20 30
160 170 180 190 200 210
pF1KB8 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB8 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB8 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB8 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB8 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
340 350 360 370 380 390
520 530 540
pF1KB8 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
::::::::::::::::::::::::::::::::::
NP_001 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
400 410 420
>>NP_001271153 (OMIM: 612722) elongator complex protein (428 aa)
initn: 2792 init1: 2792 opt: 2795 Z-score: 3302.9 bits: 620.6 E(85289): 3.1e-177
Smith-Waterman score: 2795; 98.8% identity (98.8% similar) in 424 aa overlap (125-547:5-428)
100 110 120 130 140 150
pF1KB8 KPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYE-PTSMRAIRARYDPFLQTRHRIE
: : : ::::::::::::::::::::::
NP_001 MSTHQFYRKYMCPTSMRAIRARYDPFLQTRHRIE
10 20 30
160 170 180 190 200 210
pF1KB8 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB8 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB8 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB8 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB8 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
340 350 360 370 380 390
520 530 540
pF1KB8 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
::::::::::::::::::::::::::::::::::
NP_001 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
400 410 420
>>XP_006716417 (OMIM: 612722) PREDICTED: elongator compl (428 aa)
initn: 2792 init1: 2792 opt: 2795 Z-score: 3302.9 bits: 620.6 E(85289): 3.1e-177
Smith-Waterman score: 2795; 98.8% identity (98.8% similar) in 424 aa overlap (125-547:5-428)
100 110 120 130 140 150
pF1KB8 KPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYE-PTSMRAIRARYDPFLQTRHRIE
: : : ::::::::::::::::::::::
XP_006 MSTHQFYRKYMCPTSMRAIRARYDPFLQTRHRIE
10 20 30
160 170 180 190 200 210
pF1KB8 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB8 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB8 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB8 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB8 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
340 350 360 370 380 390
520 530 540
pF1KB8 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
::::::::::::::::::::::::::::::::::
XP_006 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
400 410 420
547 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:25:17 2016 done: Fri Nov 4 10:25:18 2016
Total Scan time: 7.580 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]