Result of FASTA (ccds) for
pF1KB8194
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8194, 547 aa
1>>>pF1KB8194 547 - 547 aa - 547 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6212+/-0.00104; mu= 16.8791+/- 0.063
mean_var=72.0684+/-14.633, 0's: 0 Z-trim(103.7): 16 B-trim: 48 in 1/52
Lambda= 0.151078
statistics sampled from 7515 (7521) to 7515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.231), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS6065.1 ELP3 gene_id:55140|Hs108|chr8 ( 547) 3672 810.1 0
CCDS75717.1 ELP3 gene_id:55140|Hs108|chr8 ( 533) 3580 790.0 0
CCDS75718.1 ELP3 gene_id:55140|Hs108|chr8 ( 475) 3216 710.7 9.9e-205
CCDS64860.1 ELP3 gene_id:55140|Hs108|chr8 ( 455) 3096 684.5 7.1e-197
CCDS64861.1 ELP3 gene_id:55140|Hs108|chr8 ( 428) 2795 618.9 3.8e-177
>>CCDS6065.1 ELP3 gene_id:55140|Hs108|chr8 (547 aa)
initn: 3672 init1: 3672 opt: 3672 Z-score: 4325.2 bits: 810.1 E(32554): 0
Smith-Waterman score: 3672; 100.0% identity (100.0% similar) in 547 aa overlap (1-547:1-547)
10 20 30 40 50 60
pF1KB8 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
490 500 510 520 530 540
pF1KB8 YMVKMLK
:::::::
CCDS60 YMVKMLK
>>CCDS75717.1 ELP3 gene_id:55140|Hs108|chr8 (533 aa)
initn: 3580 init1: 3580 opt: 3580 Z-score: 4217.0 bits: 790.0 E(32554): 0
Smith-Waterman score: 3580; 100.0% identity (100.0% similar) in 533 aa overlap (15-547:1-533)
10 20 30 40 50 60
pF1KB8 MRQKRKGDLSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDI
10 20 30 40
70 80 90 100 110 120
pF1KB8 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEE
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGC
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWT
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQV
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB8 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGS
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB8 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGP
470 480 490 500 510 520
pF1KB8 YMVKMLK
:::::::
CCDS75 YMVKMLK
530
>>CCDS75718.1 ELP3 gene_id:55140|Hs108|chr8 (475 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 3789.0 bits: 710.7 E(32554): 9.9e-205
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 475 aa overlap (73-547:1-475)
50 60 70 80 90 100
pF1KB8 TKTAAKYGLSAQPRLVDIIAAVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHI
::::::::::::::::::::::::::::::
CCDS75 MPKLKAKPIRTASGIAVVAVMCKPHRCPHI
10 20 30
110 120 130 140 150 160
pF1KB8 SFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB8 DKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIET
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB8 RPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVV
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB8 AHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB8 SDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVR
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB8 TREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFR
340 350 360 370 380 390
470 480 490 500 510 520
pF1KB8 FELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVIS
400 410 420 430 440 450
530 540
pF1KB8 GVGTRNYYRKIGYRLQGPYMVKMLK
:::::::::::::::::::::::::
CCDS75 GVGTRNYYRKIGYRLQGPYMVKMLK
460 470
>>CCDS64860.1 ELP3 gene_id:55140|Hs108|chr8 (455 aa)
initn: 3096 init1: 3096 opt: 3096 Z-score: 3648.0 bits: 684.5 E(32554): 7.1e-197
Smith-Waterman score: 3096; 100.0% identity (100.0% similar) in 455 aa overlap (93-547:1-455)
70 80 90 100 110 120
pF1KB8 AVPPQYRKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEY
::::::::::::::::::::::::::::::
CCDS64 MCKPHRCPHISFTGNICVYCPGGPDSDFEY
10 20 30
130 140 150 160 170 180
pF1KB8 STQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 STQSYTGYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKVEFIVMGGTFMALPEEYR
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB8 DYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DYFIRNLHDALSGHTSNNIYEAVKYSERSLTKCIGITIETRPDYCMKRHLSDMLTYGCTR
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDSGFKVVAHMMPDLPNVGLERDIEQFT
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB8 EFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EFFENPAFRPDGLKLYPTLVIRGTGLYELWKSGRYKSYSPSDLVELVARILALVPPWTRV
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB8 YRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVEL
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB8 VRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVV
340 350 360 370 380 390
490 500 510 520 530 540
pF1KB8 PVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYM
400 410 420 430 440 450
pF1KB8 VKMLK
:::::
CCDS64 VKMLK
>>CCDS64861.1 ELP3 gene_id:55140|Hs108|chr8 (428 aa)
initn: 2792 init1: 2792 opt: 2795 Z-score: 3293.8 bits: 618.9 E(32554): 3.8e-177
Smith-Waterman score: 2795; 98.8% identity (98.8% similar) in 424 aa overlap (125-547:5-428)
100 110 120 130 140 150
pF1KB8 KPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYTGYE-PTSMRAIRARYDPFLQTRHRIE
: : : ::::::::::::::::::::::
CCDS64 MSTHQFYRKYMCPTSMRAIRARYDPFLQTRHRIE
10 20 30
160 170 180 190 200 210
pF1KB8 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QLKQLGHSVDKVEFIVMGGTFMALPEEYRDYFIRNLHDALSGHTSNNIYEAVKYSERSLT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KCIGITIETRPDYCMKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB8 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AKDSGFKVVAHMMPDLPNVGLERDIEQFTEFFENPAFRPDGLKLYPTLVIRGTGLYELWK
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB8 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SGRYKSYSPSDLVELVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKD
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB8 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRL
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB8 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEH
340 350 360 370 380 390
520 530 540
pF1KB8 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
::::::::::::::::::::::::::::::::::
CCDS64 GSGKIAVISGVGTRNYYRKIGYRLQGPYMVKMLK
400 410 420
547 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:25:17 2016 done: Fri Nov 4 10:25:17 2016
Total Scan time: 2.340 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]