FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8192, 224 aa
  1>>>pF1KB8192 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7271+/-0.000769; mu= 9.1797+/- 0.047
 mean_var=123.1682+/-23.912, 0's: 0 Z-trim(112.6): 9  B-trim: 0 in 0/52
 Lambda= 0.115565
 statistics sampled from 13328 (13331) to 13328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.41), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS59241.1 MED4 gene_id:29079|Hs108|chr13         ( 224) 1473 255.7 1.7e-68
CCDS9408.1 MED4 gene_id:29079|Hs108|chr13          ( 270) 1473 255.8   2e-68


>>CCDS59241.1 MED4 gene_id:29079|Hs108|chr13              (224 aa)
 initn: 1473 init1: 1473 opt: 1473  Z-score: 1343.1  bits: 255.7 E(32554): 1.7e-68
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB8 MLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVLAPQYPWQSND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVLAPQYPWQSND
              130       140       150       160       170       180

              190       200       210       220    
pF1KB8 MSMNMLPPNHSSDFLLEPPGHNKENEDDVEIMSTDSSSSSSESD
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSMNMLPPNHSSDFLLEPPGHNKENEDDVEIMSTDSSSSSSESD
              190       200       210       220    

>>CCDS9408.1 MED4 gene_id:29079|Hs108|chr13               (270 aa)
 initn: 1473 init1: 1473 opt: 1473  Z-score: 1342.0  bits: 255.8 E(32554): 2e-68
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:47-270)

                                             10        20        30
pF1KB8                               MLAISRNQKLLQAGEENQVLELLIHRDGEF
                                     ::::::::::::::::::::::::::::::
CCDS94 GLGVAGGNSTRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEF
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KB8 QELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 QELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIE
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KB8 KARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTN
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KB8 GVNGHLPGDALAAGRLPDVLAPQYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 GVNGHLPGDALAAGRLPDVLAPQYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVE
        200       210       220       230       240       250      

              220    
pF1KB8 IMSTDSSSSSSESD
       ::::::::::::::
CCDS94 IMSTDSSSSSSESD
        260       270




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:23:23 2016 done: Fri Nov  4 10:23:23 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]