Result of FASTA (omim) for
pF1KB8190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8190, 149 aa
1>>>pF1KB8190 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3109+/-0.000367; mu= 11.0668+/- 0.023
mean_var=58.2310+/-11.649, 0's: 0 Z-trim(112.4): 13 B-trim: 169 in 1/51
Lambda= 0.168073
statistics sampled from 21314 (21324) to 21314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.25), width: 16
Scan time: 4.860
The best scores are: opt bits E(85289)
NP_006692 (OMIM: 608572,611595) thioredoxin-like p ( 142) 379 100.0 1.4e-21
NP_001292486 (OMIM: 608572,611595) thioredoxin-lik ( 134) 351 93.2 1.5e-19
NP_001290400 (OMIM: 608572,611595) thioredoxin-lik ( 103) 216 60.5 8.2e-10
NP_001292492 (OMIM: 608572,611595) thioredoxin-lik ( 71) 175 50.5 5.8e-07
NP_001292493 (OMIM: 608572,611595) thioredoxin-lik ( 71) 175 50.5 5.8e-07
NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1 ( 335) 132 40.3 0.0032
NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform ( 335) 132 40.3 0.0032
>>NP_006692 (OMIM: 608572,611595) thioredoxin-like prote (142 aa)
initn: 436 init1: 369 opt: 379 Z-score: 508.5 bits: 100.0 E(85289): 1.4e-21
Smith-Waterman score: 379; 37.8% identity (77.6% similar) in 143 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
::..::.: . .::::: : ..:.:.:::.: ::.:...:..: . . ....:.:::
NP_006 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI
::. .. ....... : : :: ::: ..:. .: :. ...:. ... ::...:.::..
NP_006 VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV
70 80 90 100 110
120 130 140
pF1KB8 YRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
:::: .:. .: :: : .. .:
NP_006 YRGARKGRGLVVSPKDYSTKYRY
120 130 140
>>NP_001292486 (OMIM: 608572,611595) thioredoxin-like pr (134 aa)
initn: 391 init1: 198 opt: 351 Z-score: 472.2 bits: 93.2 E(85289): 1.5e-19
Smith-Waterman score: 351; 37.1% identity (74.8% similar) in 143 aa overlap (1-142:1-134)
10 20 30 40 50 60
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
::..::.: . .::::: : ..:.:.:::.: ::.:...:.. ...:.:::
NP_001 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEV--------KNFAVIYL
10 20 30 40 50
70 80 90 100 110
pF1KB8 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI
::. .. ....... : : :: ::: ..:. .: :. ...:. ... ::...:.::..
NP_001 VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV
60 70 80 90 100 110
120 130 140
pF1KB8 YRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
:::: .:. .: :: : .. .:
NP_001 YRGARKGRGLVVSPKDYSTKYRY
120 130
>>NP_001290400 (OMIM: 608572,611595) thioredoxin-like pr (103 aa)
initn: 241 init1: 198 opt: 216 Z-score: 297.1 bits: 60.5 E(85289): 8.2e-10
Smith-Waterman score: 216; 34.4% identity (77.4% similar) in 93 aa overlap (51-142:12-103)
30 40 50 60 70 80
pF1KB8 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPS
.....:.:::::. .. ....... : :
NP_001 MLLARKQILCVNVKNFAVIYLVDITEVPDFNKMYEL-YDPC
10 20 30 40
90 100 110 120 130
pF1KB8 TV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNI
:: ::: ..:. .: :. ...:. ... ::...:.::..:::: .:. .: :: : ..
NP_001 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTK
50 60 70 80 90 100
140
pF1KB8 PKYDLLYQDI
.:
NP_001 YRY
>>NP_001292492 (OMIM: 608572,611595) thioredoxin-like pr (71 aa)
initn: 205 init1: 162 opt: 175 Z-score: 246.0 bits: 50.5 E(85289): 5.8e-07
Smith-Waterman score: 175; 38.8% identity (74.6% similar) in 67 aa overlap (77-142:5-71)
50 60 70 80 90 100
pF1KB8 KTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGS
: : :: ::: ..:. .: :. ...:. .
NP_001 MYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWA
10 20 30
110 120 130 140
pF1KB8 FKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
.. ::...:.::..:::: .:. .: :: : .. .:
NP_001 MEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
40 50 60 70
>>NP_001292493 (OMIM: 608572,611595) thioredoxin-like pr (71 aa)
initn: 205 init1: 162 opt: 175 Z-score: 246.0 bits: 50.5 E(85289): 5.8e-07
Smith-Waterman score: 175; 38.8% identity (74.6% similar) in 67 aa overlap (77-142:5-71)
50 60 70 80 90 100
pF1KB8 KTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGS
: : :: ::: ..:. .: :. ...:. .
NP_001 MYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWA
10 20 30
110 120 130 140
pF1KB8 FKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
.. ::...:.::..:::: .:. .: :: : .. .:
NP_001 MEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
40 50 60 70
>>NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1 [Hom (335 aa)
initn: 51 init1: 51 opt: 132 Z-score: 178.8 bits: 40.3 E(85289): 0.0032
Smith-Waterman score: 132; 21.7% identity (66.0% similar) in 106 aa overlap (10-113:18-122)
10 20 30 40 50
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL
: . .. .. :...::..: : : :....... ...:
NP_006 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHM-KVDYG-SPDHTKFVGSFKTKQ
... . : ... . .. ..:: .:. .:: :.:.. ..: . .:. :: : ..
NP_006 PQVSFVKL-EAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSG
70 80 90 100 110
120 130 140
pF1KB8 DFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
.:.
NP_006 SFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF
120 130 140 150 160 170
>>NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform 1 [ (335 aa)
initn: 51 init1: 51 opt: 132 Z-score: 178.8 bits: 40.3 E(85289): 0.0032
Smith-Waterman score: 132; 21.7% identity (66.0% similar) in 106 aa overlap (10-113:18-122)
10 20 30 40 50
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL
: . .. .. :...::..: : : :....... ...:
NP_001 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHM-KVDYG-SPDHTKFVGSFKTKQ
... . : ... . .. ..:: .:. .:: :.:.. ..: . .:. :: : ..
NP_001 PQVSFVKL-EAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSG
70 80 90 100 110
120 130 140
pF1KB8 DFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
.:.
NP_001 SFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF
120 130 140 150 160 170
149 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:22:12 2016 done: Fri Nov 4 10:22:12 2016
Total Scan time: 4.860 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]