FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8190, 149 aa
  1>>>pF1KB8190 149 - 149 aa - 149 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2632+/-0.000806; mu= 11.0107+/- 0.048
 mean_var=51.7824+/-10.385, 0's: 0 Z-trim(105.1): 14  B-trim: 42 in 2/47
 Lambda= 0.178231
 statistics sampled from 8256 (8262) to 8256 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.254), width:  16
 Scan time:  1.300

The best scores are:                                      opt bits E(32554)
CCDS10906.1 TXNL4B gene_id:54957|Hs108|chr16       ( 149)  969 256.8 3.6e-69
CCDS32852.1 TXNL4A gene_id:10907|Hs108|chr18       ( 142)  379 105.1 1.6e-23


>>CCDS10906.1 TXNL4B gene_id:54957|Hs108|chr16            (149 aa)
 initn: 969 init1: 969 opt: 969  Z-score: 1355.4  bits: 256.8 E(32554): 3.6e-69
Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY
               70        80        90       100       110       120

              130       140         
pF1KB8 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI
       :::::::::::::::::::::::::::::
CCDS10 RGAMRGKLIVQSPIDPKNIPKYDLLYQDI
              130       140         

>>CCDS32852.1 TXNL4A gene_id:10907|Hs108|chr18            (142 aa)
 initn: 436 init1: 369 opt: 379  Z-score: 535.8  bits: 105.1 E(32554): 1.6e-23
Smith-Waterman score: 379; 37.8% identity (77.6% similar) in 143 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB8 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL
       ::..::.: .  .::::: :  ..:.:.:::.: ::.:...:..: . .  ....:.:::
CCDS32 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KB8 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI
       ::. ..  ....... : : :: ::: ..:. .: :. ...:.  ... ::...:.::..
CCDS32 VDITEVPDFNKMYEL-YDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV
               70         80        90       100       110         

     120       130       140         
pF1KB8 YRGAMRGKLIVQSPIDPKNIPKYDLLYQDI
       :::: .:. .: :: : ..  .:       
CCDS32 YRGARKGRGLVVSPKDYSTKYRY       
     120       130       140         




149 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:22:11 2016 done: Fri Nov  4 10:22:11 2016
 Total Scan time:  1.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]