FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8175, 501 aa
  1>>>pF1KB8175 501 - 501 aa - 501 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2712+/-0.000953; mu= 9.6393+/- 0.058
 mean_var=119.2226+/-23.099, 0's: 0 Z-trim(108.5): 17  B-trim: 11 in 1/53
 Lambda= 0.117461
 statistics sampled from 10268 (10274) to 10268 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS428.1 SF3A3 gene_id:10946|Hs108|chr1           ( 501) 3351 579.0 4.1e-165


>>CCDS428.1 SF3A3 gene_id:10946|Hs108|chr1                (501 aa)
 initn: 3351 init1: 3351 opt: 3351  Z-score: 3077.8  bits: 579.0 E(32554): 4.1e-165
Smith-Waterman score: 3351; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KB8 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
              430       440       450       460       470       480

              490       500 
pF1KB8 DSSGNVVNKKTYEDLKRQGLL
       :::::::::::::::::::::
CCDS42 DSSGNVVNKKTYEDLKRQGLL
              490       500 




501 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:15:58 2016 done: Fri Nov  4 10:15:58 2016
 Total Scan time:  2.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]