FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8167, 439 aa
  1>>>pF1KB8167 439 - 439 aa - 439 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.4530+/-0.000543; mu= -15.2569+/- 0.034
 mean_var=461.6445+/-92.490, 0's: 0 Z-trim(118.8): 24  B-trim: 0 in 0/54
 Lambda= 0.059693
 statistics sampled from 32062 (32084) to 32062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.376), width:  16
 Scan time:  6.990

The best scores are:                                      opt bits E(85289)
NP_005917 (OMIM: 600215) microfibrillar-associated ( 439) 2824 257.8 4.1e-68


>>NP_005917 (OMIM: 600215) microfibrillar-associated pro  (439 aa)
 initn: 2824 init1: 2824 opt: 2824  Z-score: 1343.8  bits: 257.8 E(85289): 4.1e-68
Smith-Waterman score: 2824; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB8 MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
              370       380       390       400       410       420

              430         
pF1KB8 AAGVRDVFERPSAKKRKTT
       :::::::::::::::::::
NP_005 AAGVRDVFERPSAKKRKTT
              430         




439 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:11:03 2016 done: Fri Nov  4 10:11:04 2016
 Total Scan time:  6.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]