FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8167, 439 aa
  1>>>pF1KB8167 439 - 439 aa - 439 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4354+/-0.00123; mu= -9.6251+/- 0.073
 mean_var=406.9845+/-83.942, 0's: 0 Z-trim(111.1): 36  B-trim: 10 in 1/51
 Lambda= 0.063575
 statistics sampled from 12061 (12077) to 12061 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.371), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS10105.1 MFAP1 gene_id:4236|Hs108|chr15         ( 439) 2824 273.3 3.3e-73


>>CCDS10105.1 MFAP1 gene_id:4236|Hs108|chr15              (439 aa)
 initn: 2824 init1: 2824 opt: 2824  Z-score: 1427.8  bits: 273.3 E(32554): 3.3e-73
Smith-Waterman score: 2824; 100.0% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KB8 MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
              370       380       390       400       410       420

              430         
pF1KB8 AAGVRDVFERPSAKKRKTT
       :::::::::::::::::::
CCDS10 AAGVRDVFERPSAKKRKTT
              430         




439 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:11:03 2016 done: Fri Nov  4 10:11:03 2016
 Total Scan time:  3.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]