FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8163, 123 aa
  1>>>pF1KB8163 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7085+/-0.000562; mu= 13.9068+/- 0.034
 mean_var=53.7371+/-10.678, 0's: 0 Z-trim(112.7): 6  B-trim: 549 in 1/50
 Lambda= 0.174959
 statistics sampled from 13445 (13447) to 13445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.413), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS1428.1 RABIF gene_id:5877|Hs108|chr1           ( 123)  858 223.3 2.9e-59


>>CCDS1428.1 RABIF gene_id:5877|Hs108|chr1                (123 aa)
 initn: 858 init1: 858 opt: 858  Z-score: 1177.5  bits: 223.3 E(32554): 2.9e-59
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB8 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERV
               70        80        90       100       110       120

          
pF1KB8 SHE
       :::
CCDS14 SHE
          




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:09:11 2016 done: Fri Nov  4 10:09:11 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]