Result of FASTA (ccds) for
pF1KB8162
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8162, 359 aa
1>>>pF1KB8162 359 - 359 aa - 359 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1974+/-0.00117; mu= 13.6905+/- 0.070
mean_var=154.9087+/-34.453, 0's: 0 Z-trim(106.3): 120 B-trim: 536 in 1/50
Lambda= 0.103047
statistics sampled from 8752 (8887) to 8752 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.273), width: 16
Scan time: 2.320
The best scores are: opt bits E(32554)
CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11 ( 359) 2370 364.6 7.6e-101
CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11 ( 364) 2134 329.5 2.8e-90
CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 ( 339) 1248 197.7 1.2e-50
CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11 ( 143) 909 146.9 1e-35
CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11 ( 173) 902 145.9 2.4e-35
CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11 ( 143) 896 145.0 3.9e-35
CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 ( 669) 498 86.6 6.7e-17
CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 ( 156) 437 76.8 1.4e-14
>>CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11 (359 aa)
initn: 2370 init1: 2370 opt: 2370 Z-score: 1924.0 bits: 364.6 E(32554): 7.6e-101
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYG
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 RDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRARYSAF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRARYSAF
310 320 330 340 350
>>CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11 (364 aa)
initn: 1922 init1: 1466 opt: 2134 Z-score: 1734.3 bits: 329.5 E(32554): 2.8e-90
Smith-Waterman score: 2134; 89.3% identity (97.0% similar) in 365 aa overlap (1-359:1-364)
10 20 30 40 50 60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
:::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS41 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.
CCDS41 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYRV-RSYEAVAAAAAA
:::::.:::::::::::::::::.::.:.:::.:::::: :::: :. :::::::::::
CCDS41 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAA-
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAAT----
:.:::::::.:.:::::.:...:::.:::.:::::::::.::::::.:: :::::.
CCDS41 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA
..:::::::::::::.: .:::::::::: ::::::::::.:::::::::::::::.:::
CCDS41 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA
300 310 320 330 340 350
pF1KB8 RYSAF
:::::
CCDS41 RYSAF
360
>>CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 (339 aa)
initn: 992 init1: 580 opt: 1248 Z-score: 1022.8 bits: 197.7 E(32554): 1.2e-50
Smith-Waterman score: 1489; 65.0% identity (82.0% similar) in 366 aa overlap (2-359:1-339)
10 20 30 40 50
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . . :. :::.: .::.::::. ::. : :::::.::
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD
:::::::::::::::::::::::::::::::::::::::.:
CCDS55 -------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
120 130 140 150
180 190 200 210 220 230
pF1KB8 RTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYRV-RSYEAVAAAA
:.:::::.:::::::::::::::::.::.:.:::.:::::: :::: :. ::::::::::
CCDS55 RSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAA
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 AASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAAT--
: :.:::::::.:.:::::.:...:::.:::.:::::::::.::::::.:: :::::.
CCDS55 A-SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVT
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB8 --TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVD
..:::::::::::::.: .:::::::::: ::::::::::.:::::::::::::::.:
CCDS55 AASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYAD
280 290 300 310 320 330
pF1KB8 RARYSAF
:::::::
CCDS55 RARYSAF
>>CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11 (143 aa)
initn: 1108 init1: 909 opt: 909 Z-score: 754.8 bits: 146.9 E(32554): 1e-35
Smith-Waterman score: 909; 99.3% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
::::::::::::::::::.
CCDS66 AEDAVEAIRGLDNTEFQGRIIAD
130 140
>>CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11 (173 aa)
initn: 921 init1: 902 opt: 902 Z-score: 748.2 bits: 145.9 E(32554): 2.4e-35
Smith-Waterman score: 902; 98.6% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
:::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
:::::::::::::::::::
CCDS55 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC
130 140 150 160 170
>>CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11 (143 aa)
initn: 896 init1: 896 opt: 896 Z-score: 744.3 bits: 145.0 E(32554): 3.9e-35
Smith-Waterman score: 896; 98.6% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
:::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
::::::::::::::::::
CCDS55 AEDAVEAIRGLDNTEFQGGMCVG
130 140
>>CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 (669 aa)
initn: 480 init1: 326 opt: 498 Z-score: 416.8 bits: 86.6 E(32554): 6.7e-17
Smith-Waterman score: 510; 33.0% identity (60.1% similar) in 358 aa overlap (2-334:1-355)
10 20 30 40 50
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS81 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . . :. :::.: .::.::::. ::. : :::::.:::::::::
CCDS81 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD
:. :: :: :.. : .:::..:.:::. . .::.. ::: . : : . :
CCDS81 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 RTGRVA--DFTEQYNEQYGAVR------TPYTMGYGESMYYND----AYGALDYYKRYRV
: : :. . .... :. :: .: .: . .: : .
CCDS81 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 RSYEAVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVD---PYDRHLL-PNSGAA
:. .:. .:: : : ... : ... ..:. . ::. :: .: :.: .:
CCDS81 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
240 250 260 270 280 290
290 300 310 320 330
pF1KB8 ATSA-----AMAAAAATTSSYYGRDR--SPLRRAAAMLPTVGEGYGYGPESELSQASAAT
:.:. . .:.. ::: :. : : .:. ... .:: : : .::...
CCDS81 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLA-SYGNQPSSYGAQAASSY
300 310 320 330 340 350
340 350
pF1KB8 RNSLYDMARYEREQYVDRARYSAF
CCDS81 GVRAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAP
360 370 380 390 400 410
>>CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 (156 aa)
initn: 395 init1: 292 opt: 437 Z-score: 375.1 bits: 76.8 E(32554): 1.4e-14
Smith-Waterman score: 437; 45.9% identity (75.0% similar) in 148 aa overlap (2-147:1-148)
10 20 30 40 50
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . . :. :::.: .::.::::. ::. : :::::.:::::::::
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD
:. :: :: :.. : .:::..:.:::
CCDS55 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV
120 130 140 150
359 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:08:02 2016 done: Fri Nov 4 10:08:03 2016
Total Scan time: 2.320 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]