FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8159, 140 aa
  1>>>pF1KB8159 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9446+/-0.000752; mu= 12.3277+/- 0.045
 mean_var=49.5899+/- 9.953, 0's: 0 Z-trim(106.9): 16  B-trim: 3 in 1/46
 Lambda= 0.182128
 statistics sampled from 9225 (9230) to 9225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS3148.1 PFN2 gene_id:5217|Hs108|chr3            ( 140)  963 260.3 2.8e-70
CCDS46934.1 PFN2 gene_id:5217|Hs108|chr3           ( 140)  895 242.4 6.8e-65
CCDS11061.1 PFN1 gene_id:5216|Hs108|chr17          ( 140)  605 166.2 5.9e-42
CCDS34301.1 PFN3 gene_id:345456|Hs108|chr5         ( 137)  385 108.4 1.4e-24


>>CCDS3148.1 PFN2 gene_id:5217|Hs108|chr3                 (140 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 1375.1  bits: 260.3 E(32554): 2.8e-70
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB8 GGGLNKKAYSMAKYLRDSGF
       ::::::::::::::::::::
CCDS31 GGGLNKKAYSMAKYLRDSGF
              130       140

>>CCDS46934.1 PFN2 gene_id:5217|Hs108|chr3                (140 aa)
 initn: 907 init1: 895 opt: 895  Z-score: 1278.6  bits: 242.4 E(32554): 6.8e-65
Smith-Waterman score: 895; 94.9% identity (97.1% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB8 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
       ::::::::::::::::::::::::::::::::::::::::::::::::.::.::::::::
CCDS46 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB8 GGGLNKKAYSMAKYLRDSGF
       :: :::::: .: ::: :  
CCDS46 GGTLNKKAYELALYLRRSDV
              130       140

>>CCDS11061.1 PFN1 gene_id:5216|Hs108|chr17               (140 aa)
 initn: 619 init1: 605 opt: 605  Z-score: 866.8  bits: 166.2 E(32554): 5.9e-42
Smith-Waterman score: 605; 61.4% identity (83.6% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
       ::::..:.:::: :: ::.:::::: :.  ::::. : .: .::: :. ..::::: .:.
CCDS11 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
       .::::::..:::::::::  ::. .::.:::: :: ::.::.: .. ..::..:::::::
CCDS11 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB8 GGGLNKKAYSMAKYLRDSGF
       :: .::: : ::..:: : .
CCDS11 GGLINKKCYEMASHLRRSQY
              130       140

>>CCDS34301.1 PFN3 gene_id:345456|Hs108|chr5              (137 aa)
 initn: 360 init1: 238 opt: 385  Z-score: 554.5  bits: 108.4 E(32554): 1.4e-24
Smith-Waterman score: 385; 41.0% identity (71.2% similar) in 139 aa overlap (1-139:1-136)

               10        20        30        40        50        60
pF1KB8 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
       :. :. :.. .. :   ...::::. : . :::.  ::.. .:.: :. ...: ::. :.
CCDS34 MGDWKVYISAVLRDQRIDDVAIVGHADNSCVWASRPGGLLAAISPQEVGVLTGPDRHTFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
         ::..:...: :::: : ..:: ..: :::   :  .  : :::: :.:. .::..:::
CCDS34 QAGLSVGGRRCCVIRDHLLAEGDGVLDARTK---GLDARAVCVGRAPRALLVLMGRRGVH
               70        80        90          100       110       

              130       140
pF1KB8 GGGLNKKAYSMAKYLRDSGF
       :: ::: .. . . :: .: 
CCDS34 GGILNKTVHELIRGLRMQGA
       120       130       




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:06:53 2016 done: Fri Nov  4 10:06:54 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]