Result of FASTA (ccds) for
pF1KB8153
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8153, 413 aa
1>>>pF1KB8153 413 - 413 aa - 413 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7700+/-0.000827; mu= 8.9418+/- 0.050
mean_var=198.0706+/-39.645, 0's: 0 Z-trim(115.1): 42 B-trim: 91 in 1/50
Lambda= 0.091131
statistics sampled from 15651 (15692) to 15651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width: 16
Scan time: 2.330
The best scores are: opt bits E(32554)
CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9 ( 413) 2857 387.6 1.2e-107
CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1 ( 393) 919 132.7 5.8e-31
CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1 ( 387) 763 112.2 8.6e-25
CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1 ( 408) 506 78.5 1.3e-14
>>CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9 (413 aa)
initn: 2857 init1: 2857 opt: 2857 Z-score: 2046.1 bits: 387.6 E(32554): 1.2e-107
Smith-Waterman score: 2857; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)
10 20 30 40 50 60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 WGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 WGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKNLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEIN
310 320 330 340 350 360
370 380 390 400 410
pF1KB8 FGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS
370 380 390 400 410
>>CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1 (393 aa)
initn: 593 init1: 190 opt: 919 Z-score: 669.3 bits: 132.7 E(32554): 5.8e-31
Smith-Waterman score: 919; 42.8% identity (64.1% similar) in 418 aa overlap (16-413:5-393)
10 20 30 40 50 60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
.::.:::::.::: ::.:::::::..:. :: ....
CCDS30 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
10 20 30 40
70 80 90 100 110
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
:...:.: :..: : :... :: :.::::.::. :: :. .. .:
CCDS30 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
.:. : .:. :: .:: .... . .: ::: :: : .: . . .: ..
CCDS30 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA----
: :::.::::: : ::::: : : :.::.::::::.:..:.:. .
CCDS30 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHY
160 170 180 190 200
230 240 250 260 270 280
pF1KB8 --VRTEDNMGGCGVRTWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVE
.. ::. :: : ..::. :: .:.. . :: :: . : .. : :.:
CCDS30 SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH--PVADTENKENEVEEV
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB8 EETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYE
.: .:::::::: .:.. : : :::::::. . . :. :.:::: .. ..:.
CCDS30 KEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVM
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB8 DDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVA
: : :::::::::::::::::.: :::::.::: :::::: : : : :.. . :
CCDS30 D--HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-NRGSRTDKSSAS-A
330 340 350 360 370 380
410
pF1KB8 PNPDDPEDFPALS
:. :::: ::::.
CCDS30 PDVDDPEAFPALA
390
>>CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1 (387 aa)
initn: 779 init1: 313 opt: 763 Z-score: 558.6 bits: 112.2 E(32554): 8.6e-25
Smith-Waterman score: 940; 43.4% identity (65.0% similar) in 412 aa overlap (16-413:5-387)
10 20 30 40 50 60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
.::.:::::.::: ::.:::::::..:. :: ....
CCDS63 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
10 20 30 40
70 80 90 100 110
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
:...:.: :..: : :... :: :.::::.::. :: :. .. .:
CCDS63 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
.:. : .:. :: .:: .... . .: ::: :: : .: . . .: ..
CCDS63 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIAVRTE
: :::.::::: : ::::: : : :.::.::::::.:..:.:. ... :
CCDS63 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSGLKHE
160 170 180 190 200
240 250 260 270 280
pF1KB8 DNMGGCGVRTWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQ
:. :: : ..::. :: .:.. . :: :: . : .. : :.: .: .
CCDS63 DKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH--PVADTENKENEVEEVKEEGPK
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB8 EMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYEDDSHVF
:::::::: .:.. : : :::::::. . . :. :.:::: .. ..:. : : :
CCDS63 EMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD--HHF
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB8 RKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDP
::::::::::::::::.: :::::.::: :::::: : : : :.. . ::. :::
CCDS63 RKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-NRGSRTDKSSAS-APDVDDP
330 340 350 360 370 380
410
pF1KB8 EDFPALS
: ::::.
CCDS63 EAFPALA
>>CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1 (408 aa)
initn: 801 init1: 184 opt: 506 Z-score: 375.7 bits: 78.5 E(32554): 1.3e-14
Smith-Waterman score: 898; 41.5% identity (62.9% similar) in 431 aa overlap (16-413:5-408)
10 20 30 40 50 60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
.::.:::::.::: ::.:::::::..:. :: ....
CCDS30 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
10 20 30 40
70 80 90 100 110
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
:...:.: :..: : :... :: :.::::.::. :: :. .. .:
CCDS30 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
50 60 70 80 90
120 130 140 150 160 170
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
.:. : .:. :: .:: .... . .: ::: :: : .: . . .: ..
CCDS30 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA----
: :::.::::: : ::::: : : :.::.::::::.:..:.:. .
CCDS30 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHY
160 170 180 190 200
230 240 250 260 270
pF1KB8 --VRTEDNMGGCGVRTWGSGKDTSDVEPT----------APMEEPTVVEES-QGT---PE
.. ::. :: : ..::. :: : . ... .:.::. .: :
CCDS30 SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPV
210 220 230 240 250 260
280 290 300 310 320
pF1KB8 EESPAKVPELEVEEETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHK
.. : :.: .: .:::::::: .:.. : : :::::::. . . :. :.::
CCDS30 ADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHK
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB8 SKYRDDMVKDDYEDDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAEN
:: .. ..:. : : :::::::::::::::::.: :::::.::: :::::: : :
CCDS30 SKSEEAHAEDSVMD--HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-N
330 340 350 360 370 380
390 400 410
pF1KB8 YGPRAEVVMQDVAPNPDDPEDFPALS
: :.. . ::. :::: ::::.
CCDS30 RGSRTDKSSAS-APDVDDPEAFPALA
390 400
413 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:02:20 2016 done: Fri Nov 4 10:02:21 2016
Total Scan time: 2.330 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]