FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8133, 566 aa
  1>>>pF1KB8133 566 - 566 aa - 566 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4483+/-0.00098; mu= 12.7098+/- 0.058
 mean_var=98.3393+/-21.032, 0's: 0 Z-trim(106.8): 60  B-trim: 139 in 1/50
 Lambda= 0.129333
 statistics sampled from 9139 (9177) to 9139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.282), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS7014.1 FBXW5 gene_id:54461|Hs108|chr9          ( 566) 3849 729.1 3.4e-210


>>CCDS7014.1 FBXW5 gene_id:54461|Hs108|chr9               (566 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 3887.2  bits: 729.1 E(32554): 3.4e-210
Smith-Waterman score: 3849; 99.8% identity (100.0% similar) in 566 aa overlap (1-566:1-566)

               10        20        30        40        50        60
pF1KB8 MDEGGTPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MDEGGTPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PRHPAAMSWYEEFQRLYDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 PRHPAAMSWYEEFQRLYDTVPCVEVQTLREHTDQVLHLSFSHSGYQFASCSKDCTVKIWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NDLTISLLHSADMRPYNWSYTQFSQFNKDDSLLLASGVFLGPHNSSSGEIAVISLDSFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 NDLTISLLHSADMRPYNWSYTQFSQFNKDDSLLLASGVFLGPHNSSSGEIAVISLDSFAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LSRVRNKPYDVFGCWLTETSLISGNLHRIGDITSCSVLWLNNAFQDVESENVNVVKRLFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LSRVRNKPYDVFGCWLTETSLISGNLHRIGDITSCSVLWLNNAFQDVESENVNVVKRLFK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IQNLNASTVRTVMVADCSRFDSPDLLLEAGDPATSPCRIFDLGSDNEEVVAGPAPAHAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 IQNLNASTVRTVMVADCSRFDSPDLLLEAGDPATSPCRIFDLGSDNEEVVAGPAPAHAKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GLRHFLDRVLEGRAQPQLSERMLETKVAELLAQGHTKPPERSATGAKSKYLIFTTGCLTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GLRHFLDRVLEGRAQPQLSERMLETKVAELLAQGHTKPPERSATGAKSKYLIFTTGCLTY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SPHQIGIKQILPHQMTTAGPVLGEGRGSDAFFDALDHVIDIHGHIIGMGLSPDNRYLYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SPHQIGIKQILPHQMTTAGPVLGEGRGSDAFFDALDHVIDIHGHIIGMGLSPDNRYLYVN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 SRAWPNGAVVADPMQPPPIAEEIDLLVFDLKTMREVRRALRAHRAYTPNDECFFIFLDVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SRAWPNGAVVADPMQPPPIAEEIDLLVFDLKTMREVRRALRAHRAYTPNDECFFIFLDVS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 RDFVASGAEDRHGYIWDRHYNICLARLQHEDVVNSVVFSPQEQELLLTASDDATIKAWRS
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS70 RDFVASGAEDRHGYIWDRHYNICLARLRHEDVVNSVVFSPQEQELLLTASDDATIKAWRS
              490       500       510       520       530       540

              550       560      
pF1KB8 PRTMRVLQAPRPRPRTFFSWLASQRR
       ::::::::::::::::::::::::::
CCDS70 PRTMRVLQAPRPRPRTFFSWLASQRR
              550       560      




566 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:51:05 2016 done: Fri Nov  4 09:51:06 2016
 Total Scan time:  3.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]