Result of FASTA (ccds) for
pF1KB8132
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8132, 510 aa
1>>>pF1KB8132 510 - 510 aa - 510 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7088+/-0.000977; mu= -3.8032+/- 0.058
mean_var=512.1631+/-131.193, 0's: 0 Z-trim(117.0): 135 B-trim: 927 in 1/52
Lambda= 0.056672
statistics sampled from 17475 (17645) to 17475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.542), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS12971.1 ZSCAN18 gene_id:65982|Hs108|chr19 ( 510) 3525 302.8 6.1e-82
CCDS46214.1 ZSCAN18 gene_id:65982|Hs108|chr19 ( 566) 3525 302.8 6.5e-82
CCDS46215.1 ZSCAN18 gene_id:65982|Hs108|chr19 ( 374) 2593 226.4 4.4e-59
>>CCDS12971.1 ZSCAN18 gene_id:65982|Hs108|chr19 (510 aa)
initn: 3525 init1: 3525 opt: 3525 Z-score: 1584.6 bits: 302.8 E(32554): 6.1e-82
Smith-Waterman score: 3525; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)
10 20 30 40 50 60
pF1KB8 MLPLEKAFASPRSSPAPPDLPTPGSAAGVQQEEPETIPERTPADLEFSRLRFREFVYQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLPLEKAFASPRSSPAPPDLPTPGSAAGVQQEEPETIPERTPADLEFSRLRFREFVYQEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AGPHQTLARLHELCRQWLMPEARSKEQMLELLVLEQFLGILPDKVRPWVVAQYPESCKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGPHQTLARLHELCRQWLMPEARSKEQMLELLVLEQFLGILPDKVRPWVVAQYPESCKKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ASLVEGLADVLEEPGMLLGSPAGSSSILSDGVYERHMDPLLLPGELASPSQALGAGEIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ASLVEGLADVLEEPGMLLGSPAGSSSILSDGVYERHMDPLLLPGELASPSQALGAGEIPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PSETPWLSPDPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEENLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PSETPWLSPDPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEENLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLPEGGRRQESAGCACEEAAPAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLPEGGRRQESAGCACEEAAPAGV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDSATGSQRQSVIQQPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDSATGSQRQSVIQQPAP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 DRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEPGLSRGKPYACGECGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEPGLSRGKPYACGECGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 AFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGARGPQPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGARGPQPS
430 440 450 460 470 480
490 500 510
pF1KB8 TREAQAGARAGGPPESVEGEAPPAPPEAQR
::::::::::::::::::::::::::::::
CCDS12 TREAQAGARAGGPPESVEGEAPPAPPEAQR
490 500 510
>>CCDS46214.1 ZSCAN18 gene_id:65982|Hs108|chr19 (566 aa)
initn: 3525 init1: 3525 opt: 3525 Z-score: 1584.1 bits: 302.8 E(32554): 6.5e-82
Smith-Waterman score: 3525; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:57-566)
10 20 30
pF1KB8 MLPLEKAFASPRSSPAPPDLPTPGSAAGVQ
::::::::::::::::::::::::::::::
CCDS46 TGHLVIPGTSPLEPPCPWLDSHIFQCRFGKMLPLEKAFASPRSSPAPPDLPTPGSAAGVQ
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 QEEPETIPERTPADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARSKEQMLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QEEPETIPERTPADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARSKEQMLE
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 LLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLLGSPAGSSSILSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLLGSPAGSSSILSD
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB8 GVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPA
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB8 NTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVE
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB8 RDPQGSSLPEGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RDPQGSSLPEGGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPG
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB8 KAPDPQDPQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KAPDPQDPQDAESDSATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGD
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB8 SAGLEAGQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SAGLEAGQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTF
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB8 HFSLALAEHQKTHEKEKSYALGGARGPQPSTREAQAGARAGGPPESVEGEAPPAPPEAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HFSLALAEHQKTHEKEKSYALGGARGPQPSTREAQAGARAGGPPESVEGEAPPAPPEAQR
510 520 530 540 550 560
>>CCDS46215.1 ZSCAN18 gene_id:65982|Hs108|chr19 (374 aa)
initn: 1626 init1: 1626 opt: 2593 Z-score: 1174.2 bits: 226.4 E(32554): 4.4e-59
Smith-Waterman score: 2593; 99.7% identity (99.7% similar) in 375 aa overlap (136-510:1-374)
110 120 130 140 150 160
pF1KB8 RPWVVAQYPESCKKAASLVEGLADVLEEPGMLLGSPAGSSSILSDGVYERHMDPLLLPGE
::::::::::::::::::::::::::::::
CCDS46 MLLGSPAGSSSILSDGVYERHMDPLLLPGE
10 20 30
170 180 190 200 210 220
pF1KB8 LASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQH
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB8 LGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLPEGGRRQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS46 LGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLP-GGRRQ
100 110 120 130 140
290 300 310 320 330 340
pF1KB8 ESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDS
150 160 170 180 190 200
350 360 370 380 390 400
pF1KB8 ATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ATGSQRQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEP
210 220 230 240 250 260
410 420 430 440 450 460
pF1KB8 GLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEK
270 280 290 300 310 320
470 480 490 500 510
pF1KB8 EKSYALGGARGPQPSTREAQAGARAGGPPESVEGEAPPAPPEAQR
:::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKSYALGGARGPQPSTREAQAGARAGGPPESVEGEAPPAPPEAQR
330 340 350 360 370
510 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:50:30 2016 done: Fri Nov 4 09:50:30 2016
Total Scan time: 3.040 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]