Result of FASTA (omim) for
pF1KB8127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8127, 451 aa
1>>>pF1KB8127 451 - 451 aa - 451 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8072+/-0.000455; mu= 14.9109+/- 0.028
mean_var=70.6040+/-13.994, 0's: 0 Z-trim(110.8): 67 B-trim: 243 in 1/49
Lambda= 0.152637
statistics sampled from 19198 (19265) to 19198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.226), width: 16
Scan time: 5.790
The best scores are: opt bits E(85289)
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 2995 669.0 6.9e-192
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 2941 657.1 2.6e-188
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 2085 468.7 1.5e-131
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 1904 428.7 1e-119
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 1904 428.7 1e-119
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1780 401.4 1.5e-111
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1780 401.4 1.5e-111
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1780 401.4 1.5e-111
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1780 401.4 1.5e-111
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 997 229.1 1.9e-59
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 992 228.0 4.1e-59
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 992 228.0 4.1e-59
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 991 227.7 4.7e-59
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 990 227.5 5.5e-59
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 988 227.1 7.5e-59
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 988 227.1 7.5e-59
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 987 226.9 8.7e-59
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 987 226.9 8.7e-59
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 987 226.9 9.5e-59
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 987 226.9 9.6e-59
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 981 225.5 2.2e-58
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 967 222.5 1.9e-57
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 905 208.8 2.5e-53
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 853 197.3 6.5e-50
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 831 192.5 1.7e-48
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 817 189.4 1.6e-47
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 807 187.2 7.6e-47
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 804 186.6 1.2e-46
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 804 186.6 1.2e-46
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 802 186.1 1.6e-46
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 786 182.6 1.9e-45
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 778 180.8 5.3e-45
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 770 179.1 2.1e-44
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 762 177.3 6.2e-44
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 759 176.6 9.7e-44
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 759 176.6 9.7e-44
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 754 175.5 2.1e-43
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 753 175.3 2.4e-43
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 753 175.3 2.4e-43
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 733 170.9 5.6e-42
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 725 169.1 1.7e-41
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 725 169.1 1.8e-41
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 698 163.2 1.2e-39
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 678 158.8 2.1e-38
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 678 158.8 2.1e-38
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 632 148.7 2.6e-35
XP_016880205 (OMIM: 607344) PREDICTED: tubulin del ( 375) 553 131.3 4.4e-30
NP_001180539 (OMIM: 607344) tubulin delta chain is ( 396) 553 131.3 4.6e-30
NP_057345 (OMIM: 607344) tubulin delta chain isofo ( 453) 553 131.3 5.2e-30
XP_011523173 (OMIM: 607344) PREDICTED: tubulin del ( 406) 546 129.7 1.4e-29
>>NP_057521 (OMIM: 605785) tubulin gamma-2 chain isoform (451 aa)
initn: 2995 init1: 2995 opt: 2995 Z-score: 3566.0 bits: 669.0 E(85289): 6.9e-192
Smith-Waterman score: 2995; 99.8% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB8 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDE
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_057 SRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDE
370 380 390 400 410 420
430 440 450
pF1KB8 MDRSREVVQELIDEYHAATQPDYISWGTQEQ
:::::::::::::::::::::::::::::::
NP_057 MDRSREVVQELIDEYHAATQPDYISWGTQEQ
430 440 450
>>NP_001061 (OMIM: 191135,615412) tubulin gamma-1 chain (451 aa)
initn: 2941 init1: 2941 opt: 2941 Z-score: 3501.7 bits: 657.1 E(85289): 2.6e-188
Smith-Waterman score: 2941; 97.6% identity (99.3% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB8 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_001 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDE
::::::::::::::::::::::::::::: .:.:.::::::.::::::::::.:::::::
NP_001 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
370 380 390 400 410 420
430 440 450
pF1KB8 MDRSREVVQELIDEYHAATQPDYISWGTQEQ
:: :::.::.:::::::::.:::::::::::
NP_001 MDTSREIVQQLIDEYHAATRPDYISWGTQEQ
430 440 450
>>NP_001307438 (OMIM: 605785) tubulin gamma-2 chain isof (460 aa)
initn: 2085 init1: 2085 opt: 2085 Z-score: 2482.9 bits: 468.7 E(85289): 1.5e-131
Smith-Waterman score: 2967; 97.8% identity (98.0% similar) in 460 aa overlap (1-451:1-460)
10 20 30 40 50 60
pF1KB8 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 IIDREADGSDSLE---------GFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSV
::::::::::::: ::::::::::::::::::::::::::::::::::::::
NP_001 IIDREADGSDSLELQNSSRVIKGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 FPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 DVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 GPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKE
370 380 390 400 410 420
420 430 440 450
pF1KB8 DVFKDNFDEMDRSREVVQELIDEYHAATQPDYISWGTQEQ
:.::::::::::::::::::::::::::::::::::::::
NP_001 DMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWGTQEQ
430 440 450 460
>>XP_016879942 (OMIM: 605785) PREDICTED: tubulin gamma-2 (298 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 2270.4 bits: 428.7 E(85289): 1e-119
Smith-Waterman score: 1904; 99.7% identity (100.0% similar) in 292 aa overlap (160-451:7-298)
130 140 150 160 170 180
pF1KB8 DSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
::::::::::::::::::::::::::::::
XP_016 MEVTVWRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
10 20 30
190 200 210 220 230 240
pF1KB8 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB8 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB8 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQ
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
XP_016 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQ
220 230 240 250 260 270
430 440 450
pF1KB8 ELIDEYHAATQPDYISWGTQEQ
::::::::::::::::::::::
XP_016 ELIDEYHAATQPDYISWGTQEQ
280 290
>>XP_011522916 (OMIM: 605785) PREDICTED: tubulin gamma-2 (298 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 2270.4 bits: 428.7 E(85289): 1e-119
Smith-Waterman score: 1904; 99.7% identity (100.0% similar) in 292 aa overlap (160-451:7-298)
130 140 150 160 170 180
pF1KB8 DSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
::::::::::::::::::::::::::::::
XP_011 MEVTVWRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
10 20 30
190 200 210 220 230 240
pF1KB8 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB8 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB8 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQ
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
XP_011 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQ
220 230 240 250 260 270
430 440 450
pF1KB8 ELIDEYHAATQPDYISWGTQEQ
::::::::::::::::::::::
XP_011 ELIDEYHAATQPDYISWGTQEQ
280 290
>>XP_016879944 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 2123.4 bits: 401.4 E(85289): 1.5e-111
Smith-Waterman score: 1780; 99.6% identity (100.0% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KB8 GLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KB8 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB8 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KB8 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KB8 FESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KB8 TQEQ
::::
XP_016 TQEQ
>>XP_016879945 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 2123.4 bits: 401.4 E(85289): 1.5e-111
Smith-Waterman score: 1780; 99.6% identity (100.0% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KB8 GLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KB8 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB8 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KB8 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KB8 FESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KB8 TQEQ
::::
XP_016 TQEQ
>>XP_016879946 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 2123.4 bits: 401.4 E(85289): 1.5e-111
Smith-Waterman score: 1780; 99.6% identity (100.0% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KB8 GLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KB8 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB8 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KB8 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KB8 FESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KB8 TQEQ
::::
XP_016 TQEQ
>>XP_016879943 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 2123.4 bits: 401.4 E(85289): 1.5e-111
Smith-Waterman score: 1780; 99.6% identity (100.0% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KB8 GLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KB8 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB8 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KB8 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KB8 FESSCQQFDKLRKRDAFLEQFRKEDVFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KB8 TQEQ
::::
XP_016 TQEQ
>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s (445 aa)
initn: 887 init1: 315 opt: 997 Z-score: 1188.2 bits: 229.1 E(85289): 1.9e-59
Smith-Waterman score: 1001; 34.7% identity (72.0% similar) in 435 aa overlap (3-436:2-423)
10 20 30 40 50 60
pF1KB8 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
:::. :: :::::::: .::. . ::::.: : . . .: .:.. .: .:
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKY
10 20 30 40 50
70 80 90 100 110
pF1KB8 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF
.:::::.:::: .. :. ..:..... :.:. ... .:::::::.: ...: .. ....
NP_006 VPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMS
:.. .::.. : :.:: : ::..::::::.:. :. .. ..:: ....:.:: : . ..:
NP_006 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVP-SPKVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 DVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS
:.::.:::. :....:..:.: . .:: :: : :.. .:.....:.:::. ::.
NP_006 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ
:: ::.:: .: :: : ....: :::::.: :..:::. : . : :: .. .....
NP_006 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA
::.:.. : . .. :... ...:... .: ... ..... . :. : : ....:
NP_006 AKNMMAAC--DPRHGR-YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTA
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB8 LSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDVFKDNFD
. : : . ..:. ...: :.:. ::. .:: . .: :::. . : . . .:
NP_006 VC-DIP--PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT
360 370 380 390 400
420 430 440 450
pF1KB8 EMDRSREVVQELIDEYHAATQPDYISWGTQEQ
: . . ...:..::.
NP_006 EAESN---MNDLVSEYQQYQDATAEEEGEFEEEAEEEVA
410 420 430 440
451 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:47:14 2016 done: Fri Nov 4 09:47:15 2016
Total Scan time: 5.790 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]