FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8125, 455 aa
  1>>>pF1KB8125 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8402+/-0.000983; mu= 14.0707+/- 0.059
 mean_var=63.8186+/-13.289, 0's: 0 Z-trim(103.0): 28  B-trim: 0 in 0/51
 Lambda= 0.160546
 statistics sampled from 7220 (7223) to 7220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.222), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS32604.1 BLMH gene_id:642|Hs108|chr17           ( 455) 3125 732.9 1.6e-211


>>CCDS32604.1 BLMH gene_id:642|Hs108|chr17                (455 aa)
 initn: 3125 init1: 3125 opt: 3125  Z-score: 3911.2  bits: 732.9 E(32554): 1.6e-211
Smith-Waterman score: 3125; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KB8 MSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NYQKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKYNKLYTVEYLSNMVGGRKTLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NYQKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKYNKLYTVEYLSNMVGGRKTLY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 ERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFSEYVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDEWFSEYVY
              370       380       390       400       410       420

              430       440       450     
pF1KB8 EVVVDRKHVPEEVLAVLEQEPIILPAWDPMGALAE
       :::::::::::::::::::::::::::::::::::
CCDS32 EVVVDRKHVPEEVLAVLEQEPIILPAWDPMGALAE
              430       440       450     




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:45:56 2016 done: Fri Nov  4 09:45:56 2016
 Total Scan time:  2.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]