FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8124, 399 aa
  1>>>pF1KB8124 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4852+/-0.000335; mu= 8.5327+/- 0.021
 mean_var=153.8511+/-30.622, 0's: 0 Z-trim(120.3): 1  B-trim: 780 in 3/57
 Lambda= 0.103401
 statistics sampled from 35477 (35478) to 35477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.416), width:  16
 Scan time:  8.590

The best scores are:                                      opt bits E(85289)
NP_061848 (OMIM: 605061) telomeric repeat-binding  ( 399) 2615 401.5 1.8e-111


>>NP_061848 (OMIM: 605061) telomeric repeat-binding fact  (399 aa)
 initn: 2615 init1: 2615 opt: 2615  Z-score: 2122.1  bits: 401.5 E(85289): 1.8e-111
Smith-Waterman score: 2615; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KB8 MAEAMDLGKDPNGPTHSSTLFVRDDGSSMSFYVRPSPAKRRLSTLILHGGGTVCRVQEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAEAMDLGKDPNGPTHSSTLFVRDDGSSMSFYVRPSPAKRRLSTLILHGGGTVCRVQEPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AVLLAQPGEALAEASGDFISTQYILDCVERNERLELEAYRLGPASAADTGSEAKPGALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AVLLAQPGEALAEASGDFISTQYILDCVERNERLELEAYRLGPASAADTGSEAKPGALAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GAAEPEPQRHAGRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GAAEPEPQRHAGRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEEDPEAADSGEPQNKRTPDLPEEEYVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEEDPEAADSGEPQNKRTPDLPEEEYVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEIQENEEAVKKMLVEATREFEEVVVDESPPDFEIHITMCDDDPPTPEEDSETQPDEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EEIQENEEAVKKMLVEATREFEEVVVDESPPDFEIHITMCDDDPPTPEEDSETQPDEEEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYP
              310       320       330       340       350       360

              370       380       390         
pF1KB8 IWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKK
       :::::::::::::::::::::::::::::::::::::::
NP_061 IWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKK
              370       380       390         




399 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:45:21 2016 done: Fri Nov  4 09:45:22 2016
 Total Scan time:  8.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]