FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8124, 399 aa
  1>>>pF1KB8124 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4020+/-0.000824; mu= 9.1771+/- 0.050
 mean_var=149.2872+/-29.078, 0's: 0 Z-trim(112.9): 6  B-trim: 0 in 0/52
 Lambda= 0.104969
 statistics sampled from 13572 (13573) to 13572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS32491.1 TERF2IP gene_id:54386|Hs108|chr16      ( 399) 2615 407.3 1.3e-113


>>CCDS32491.1 TERF2IP gene_id:54386|Hs108|chr16           (399 aa)
 initn: 2615 init1: 2615 opt: 2615  Z-score: 2153.3  bits: 407.3 E(32554): 1.3e-113
Smith-Waterman score: 2615; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KB8 MAEAMDLGKDPNGPTHSSTLFVRDDGSSMSFYVRPSPAKRRLSTLILHGGGTVCRVQEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAEAMDLGKDPNGPTHSSTLFVRDDGSSMSFYVRPSPAKRRLSTLILHGGGTVCRVQEPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AVLLAQPGEALAEASGDFISTQYILDCVERNERLELEAYRLGPASAADTGSEAKPGALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVLLAQPGEALAEASGDFISTQYILDCVERNERLELEAYRLGPASAADTGSEAKPGALAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GAAEPEPQRHAGRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GAAEPEPQRHAGRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEEDPEAADSGEPQNKRTPDLPEEEYVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEEDPEAADSGEPQNKRTPDLPEEEYVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEIQENEEAVKKMLVEATREFEEVVVDESPPDFEIHITMCDDDPPTPEEDSETQPDEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEIQENEEAVKKMLVEATREFEEVVVDESPPDFEIHITMCDDDPPTPEEDSETQPDEEEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYP
              310       320       330       340       350       360

              370       380       390         
pF1KB8 IWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKK
       :::::::::::::::::::::::::::::::::::::::
CCDS32 IWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKK
              370       380       390         




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:45:21 2016 done: Fri Nov  4 09:45:21 2016
 Total Scan time:  2.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]