Result of FASTA (ccds) for
pF1KB8123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8123, 517 aa
1>>>pF1KB8123 517 - 517 aa - 517 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4883+/-0.00114; mu= 11.6575+/- 0.067
mean_var=95.1704+/-18.598, 0's: 0 Z-trim(104.3): 131 B-trim: 5 in 1/49
Lambda= 0.131469
statistics sampled from 7700 (7837) to 7700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.241), width: 16
Scan time: 2.550
The best scores are: opt bits E(32554)
CCDS6147.1 SNTG1 gene_id:54212|Hs108|chr8 ( 517) 3483 671.6 5.7e-193
CCDS75737.1 SNTG1 gene_id:54212|Hs108|chr8 ( 480) 2915 563.9 1.4e-160
CCDS46220.1 SNTG2 gene_id:54221|Hs108|chr2 ( 539) 637 131.8 1.9e-30
CCDS6334.1 SNTB1 gene_id:6641|Hs108|chr8 ( 538) 296 67.2 5.5e-11
>>CCDS6147.1 SNTG1 gene_id:54212|Hs108|chr8 (517 aa)
initn: 3483 init1: 3483 opt: 3483 Z-score: 3577.9 bits: 671.6 E(32554): 5.7e-193
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
pF1KB8 MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 VVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVIAVDGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVIAVDGVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDPLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDPLQD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKQCFTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKQCFTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 QSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 QSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIH
430 440 450 460 470 480
490 500 510
pF1KB8 SFFAAKVACLDPLFLGNQATASTAASSATTSKAKYTT
:::::::::::::::::::::::::::::::::::::
CCDS61 SFFAAKVACLDPLFLGNQATASTAASSATTSKAKYTT
490 500 510
>>CCDS75737.1 SNTG1 gene_id:54212|Hs108|chr8 (480 aa)
initn: 2912 init1: 2912 opt: 2915 Z-score: 2996.1 bits: 563.9 E(32554): 1.4e-160
Smith-Waterman score: 3154; 92.8% identity (92.8% similar) in 517 aa overlap (1-517:1-480)
10 20 30 40 50 60
pF1KB8 MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVIAVDGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVIAVDGVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDPLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDPLQD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKQCFTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKQCFTV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 QSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIH
:::::::: :::::::::::::::
CCDS75 ICFDAATK-------------------------------------ELEFSNLFAVLHCIH
430 440
490 500 510
pF1KB8 SFFAAKVACLDPLFLGNQATASTAASSATTSKAKYTT
:::::::::::::::::::::::::::::::::::::
CCDS75 SFFAAKVACLDPLFLGNQATASTAASSATTSKAKYTT
450 460 470 480
>>CCDS46220.1 SNTG2 gene_id:54221|Hs108|chr2 (539 aa)
initn: 1669 init1: 605 opt: 637 Z-score: 660.3 bits: 131.8 E(32554): 1.9e-30
Smith-Waterman score: 1695; 51.0% identity (76.2% similar) in 512 aa overlap (10-501:25-532)
10 20 30 40
pF1KB8 MDFRTACEETKTGICLLQDGNQE-PFKVRLHLAKDILMIQEQDVI
::: : :: : ..: . .::.:.:..: ::.:::.
CCDS46 MGTEGPPPPAASRGRQGCLLVPARTKTTIALLYDEESENAYDIRLKLTKEVLTIQKQDVV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 CVSGEPFYSGERTVTIRRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDA
::.: ..::::.::: :::.:::::::.:::.:::.::: ..: :. .:.::.:::
CCDS46 CVGGSHQGRNRRTVTLRRQPVGGLGLSIKGGSEHNVPVVISKIFEDQAADQTGMLFVGDA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 ILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPS-DQSS
.::.:::.:.. :::::..:::::.:::.:: .:..:::::::::. .:: :.::
CCDS46 VLQVNGIHVENATHEEVVHLLRNAGDEVTITVEYLREAPAFLKLPLGSP---GPSSDHSS
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 GTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYVPGT
:.:::: ::::::: . ..: : :: : . :.:::: : .:: .:.:.: ::
CCDS46 GASSPLFDSGLHLNGNSSTTAPSSPSS-PIAKDPRYEKRWLDTLSVPLSMARISRYKAGT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 DLSRQNAFQVIAVDGVCTGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPVNQQ
. : :::.:.:.::: .::.. .:.: .:::.:...:: .:: .:.: :. ..:
CCDS46 EKLRWNAFEVLALDGVSSGILRFYTAQDGTDWLRAVSANIRELTLQNMKMANKCCSPSDQ
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 IVYMGWCEAREQDPLQDRVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCK
.:.::: . . : ..... : ::::.: .: : .:::.:.::.:::.:. . :.. :
CCDS46 VVHMGWVNEKLQGADSSQTFRPKFLALKGPSFYVFSTPPVSTFDWVRAERTYHLCEVLFK
300 310 320 330 340 350
350 360 370 380
pF1KB8 I------------------LKDSDLLDRRKQCFTVQSESGEDLYFSVELESDLAQWERAF
. :.: :. :.: ::.. . :.. :.::: :.::.::..:
CCDS46 VHKFWLTEDCWLQANLYLGLQDFDFEDQRPYCFSIVAGHGKSHVFNVELGSELAMWEKSF
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB8 QTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDD
: :::.::.: .:: : ..... .:.::. :: ::.. :: ::::.:::::::::::
CCDS46 QRATFMEVQRTGSRTYMCSWQGEMLCFTVDFALGFTCFESKTKNVLWRFKFSQLKGSSDD
420 430 440 450 460 470
450 460 470 480 490 500
pF1KB8 GKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGNQATASTAA
::...:.:::: ::::::.:::::..: :::::::::.::::: .:: :. .:. :
CCDS46 GKTRVKLLFQNLDTKQIETKELEFQDLRAVLHCIHSFIAAKVASVDPGFMDSQSLARKYM
480 490 500 510 520 530
510
pF1KB8 SSATTSKAKYTT
CCDS46 YSS
>>CCDS6334.1 SNTB1 gene_id:6641|Hs108|chr8 (538 aa)
initn: 445 init1: 287 opt: 296 Z-score: 310.8 bits: 67.2 E(32554): 5.5e-11
Smith-Waterman score: 431; 25.4% identity (54.1% similar) in 460 aa overlap (49-490:104-534)
20 30 40 50 60 70
pF1KB8 DGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTIRRQTVGGFGLSIKGGAEH
: . . .: : . .: .::.:.::::: :.
CCDS63 AGHPGAGGAQPPDSPAGVRTAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKEN
80 90 100 110 120 130
80 90 100 110 120 130
pF1KB8 NIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSF
..:...::: : :. . :..:::::..:: ..: :.:.::.:. ::.:: : :..
CCDS63 KMPILISKIFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKY
140 150 160 170 180 190
140 150 160 170 180 190
pF1KB8 LKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHPNNTDTL--SCSSWPTSPG
...: ..: .::. . : . : .. : : :. :.: .
CCDS63 MREATPYVK-----------------KGSPVSEIGWETP--PPESPRLGGSTSDPPSSQS
200 210 220 230
200 210 220 230 240 250
pF1KB8 LRWEKRWCDLRLIPLLHSRFSQYVPGTD-LSRQNAFQVIAVDGVCTGIIQCLSAEDCVDW
. ... : . ::: .. . .: .:: ... . :. : :.. .. :
CCDS63 FSFHR---DRKSIPLKMCYVTRSMALADPENRQ--LEIHSPDAKHTVILRSKDSATAQAW
240 250 260 270 280
260 270 280 290 300
pF1KB8 LQAIATNISNLTKHNIKKINRNFPV-----NQQIVYMGWCEAREQDPLQDRV-YSPTFLA
..:: .:...: . : .. ... ...: ..:: :. : ... ..:....
CCDS63 FSAIHSNVNDLLTRVIAEVREQLGKTGIAGSREIRHLGWLA--EKVPGESKKQWKPALVV
290 300 310 320 330 340
310 320 330 340 350 360
pF1KB8 LRGSCLYKFLAPPVTTWDWTRAEKTFSVYE---IMCKILKDSDL--LDRRKQCFTVQSES
: . : . . : : .:. . . : : .: : ..
CCDS63 LTEKDLLIYDSMPRRKEAWFSPVHTYPLLATRLVHSGPGKGSPQAGVDLSFATRTGTRQG
350 360 370 380 390 400
370 380 390 400 410 420
pF1KB8 GEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICF-
: : .: ::..: :.. . .: : . ::. ... ::: . .::
CCDS63 IETHLFRAETSRDLSHWTRSIVQGCHNSAELIAEISTACTYKNQECRLTIHYENGFSITT
410 420 430 440 450 460
430 440 450 460 470 480
pF1KB8 ---DAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIH
..: .. . . .:: ::::: :..:. . :. : . : .. ::
CCDS63 EPQEGAFPKTIIQSPYEKLKMSSDDG---IRMLYLDFGGKDGEIQLDLHSCPKPIVFIIH
470 480 490 500 510 520
490 500 510
pF1KB8 SFFAAKVACLDPLFLGNQATASTAASSATTSKAKYTT
::..::.. :
CCDS63 SFLSAKITRLGLVA
530
517 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:44:34 2016 done: Fri Nov 4 09:44:35 2016
Total Scan time: 2.550 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]