FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8122, 214 aa
  1>>>pF1KB8122 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6534+/-0.00083; mu= 0.1247+/- 0.050
 mean_var=214.7108+/-42.498, 0's: 0 Z-trim(114.2): 21  B-trim: 21 in 1/53
 Lambda= 0.087528
 statistics sampled from 14761 (14774) to 14761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.454), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS6018.1 NPM2 gene_id:10361|Hs108|chr8           ( 214) 1380 185.8 1.7e-47
CCDS75703.1 NPM2 gene_id:10361|Hs108|chr8          ( 136)  804 112.9 9.5e-26


>>CCDS6018.1 NPM2 gene_id:10361|Hs108|chr8                (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 966.2  bits: 185.8 E(32554): 1.7e-47
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
CCDS60 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>CCDS75703.1 NPM2 gene_id:10361|Hs108|chr8               (136 aa)
 initn: 804 init1: 804 opt: 804  Z-score: 575.8  bits: 112.9 E(32554): 9.5e-26
Smith-Waterman score: 804; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::                                                          
CCDS75 YEKKAGKRRRGNKSQR                                            
              130                                                  




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:43:59 2016 done: Fri Nov  4 09:43:59 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]