FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8120, 485 aa
  1>>>pF1KB8120 485 - 485 aa - 485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6796+/-0.000926; mu= 15.5310+/- 0.055
 mean_var=60.5665+/-12.019, 0's: 0 Z-trim(104.8): 26  B-trim: 38 in 1/49
 Lambda= 0.164800
 statistics sampled from 8089 (8094) to 8089 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS42823.1 DNPEP gene_id:23549|Hs108|chr2         ( 485) 3230 776.6       0
CCDS82574.1 DNPEP gene_id:23549|Hs108|chr2         ( 493) 3153 758.3 4.2e-219


>>CCDS42823.1 DNPEP gene_id:23549|Hs108|chr2              (485 aa)
 initn: 3230 init1: 3230 opt: 3230  Z-score: 4146.1  bits: 776.6 E(32554):    0
Smith-Waterman score: 3230; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)

               10        20        30        40        50        60
pF1KB8 MSGHSPTRGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSGHSPTRGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LQRNINENFGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQRNINENFGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SPKDIVEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPKDIVEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 HVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPKSFMISADMAHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPKSFMISADMAHA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRND
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLSH
              430       440       450       460       470       480

            
pF1KB8 NLLVD
       :::::
CCDS42 NLLVD
            

>>CCDS82574.1 DNPEP gene_id:23549|Hs108|chr2              (493 aa)
 initn: 3153 init1: 3153 opt: 3153  Z-score: 4047.1  bits: 758.3 E(32554): 4.2e-219
Smith-Waterman score: 3153; 99.4% identity (99.6% similar) in 477 aa overlap (9-485:17-493)

                       10        20        30        40        50  
pF1KB8         MSGHSPTRGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRL
                       :  .::::::::::::::::::::::::::::::::::::::::
CCDS82 MARSLSIMFVPNSWLNGYHKVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB8 LQAGFSELKETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQAGFSELKETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRV
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB8 KRRSRRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KRRSRRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPIL
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB8 RIPHLAIHLQRNINENFGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RIPHLAIHLQRNINENFGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMS
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB8 LLCAHLGLSPKDIVEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLCAHLGLSPKDIVEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAG
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB8 PGSLATEPHVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPKSFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PGSLATEPHVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPKSFM
              310       320       330       340       350       360

            360       370       380       390       400       410  
pF1KB8 ISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPL
              370       380       390       400       410       420

            420       430       440       450       460       470  
pF1KB8 QDLMVRNDTPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QDLMVRNDTPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFF
              430       440       450       460       470       480

            480     
pF1KB8 ELFPSLSHNLLVD
       :::::::::::::
CCDS82 ELFPSLSHNLLVD
              490   




485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:42:17 2016 done: Fri Nov  4 09:42:18 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]