FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8116, 253 aa
  1>>>pF1KB8116 253 - 253 aa - 253 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4644+/-0.000707; mu= 13.5718+/- 0.042
 mean_var=65.8370+/-13.460, 0's: 0 Z-trim(109.7): 16  B-trim: 4 in 1/50
 Lambda= 0.158066
 statistics sampled from 11048 (11059) to 11048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS4233.2 TMCO6 gene_id:55374|Hs108|chr5          ( 493) 1654 385.7 3.2e-107
CCDS75320.1 TMCO6 gene_id:55374|Hs108|chr5         ( 499) 1654 385.7 3.3e-107


>>CCDS4233.2 TMCO6 gene_id:55374|Hs108|chr5               (493 aa)
 initn: 1654 init1: 1654 opt: 1654  Z-score: 2038.4  bits: 385.7 E(32554): 3.2e-107
Smith-Waterman score: 1654; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:241-493)

                                             10        20        30
pF1KB8                               MLQMLQPGPKLNPGVAVEFAWCLHYIICSQ
                                     ::::::::::::::::::::::::::::::
CCDS42 LGYALSQLLQAEEAPEKIIPSILASTLPQHMLQMLQPGPKLNPGVAVEFAWCLHYIICSQ
              220       230       240       250       260       270

               40        50        60        70        80        90
pF1KB8 VSNPLLIGHGALSTLGLLLLDLAGAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSNPLLIGHGALSTLGLLLLDLAGAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQ
              280       290       300       310       320       330

              100       110       120       130       140       150
pF1KB8 MQLRDERVVAALFILLQFFFQKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MQLRDERVVAALFILLQFFFQKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQL
              340       350       360       370       380       390

              160       170       180       190       200       210
pF1KB8 LPVSNVVSVMVLTVLCNVAEKGPAYCQRLWPGPLLPALLHTLAFSDTEVVGQSLELLHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPVSNVVSVMVLTVLCNVAEKGPAYCQRLWPGPLLPALLHTLAFSDTEVVGQSLELLHLL
              400       410       420       430       440       450

              220       230       240       250   
pF1KB8 FLYQPEAVQVFLQQSGLQALERHQEEAQLQDRVYALQQTALQG
       :::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLYQPEAVQVFLQQSGLQALERHQEEAQLQDRVYALQQTALQG
              460       470       480       490   

>>CCDS75320.1 TMCO6 gene_id:55374|Hs108|chr5              (499 aa)
 initn: 1654 init1: 1654 opt: 1654  Z-score: 2038.3  bits: 385.7 E(32554): 3.3e-107
Smith-Waterman score: 1654; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:247-499)

                                             10        20        30
pF1KB8                               MLQMLQPGPKLNPGVAVEFAWCLHYIICSQ
                                     ::::::::::::::::::::::::::::::
CCDS75 QLLQAEEAPEKIIPPASASSSILASTLPQHMLQMLQPGPKLNPGVAVEFAWCLHYIICSQ
        220       230       240       250       260       270      

               40        50        60        70        80        90
pF1KB8 VSNPLLIGHGALSTLGLLLLDLAGAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSNPLLIGHGALSTLGLLLLDLAGAVQKTEDAGLELLACPVLRCLSNLLTEAAVETVGGQ
        280       290       300       310       320       330      

              100       110       120       130       140       150
pF1KB8 MQLRDERVVAALFILLQFFFQKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MQLRDERVVAALFILLQFFFQKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLIEPLLQL
        340       350       360       370       380       390      

              160       170       180       190       200       210
pF1KB8 LPVSNVVSVMVLTVLCNVAEKGPAYCQRLWPGPLLPALLHTLAFSDTEVVGQSLELLHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPVSNVVSVMVLTVLCNVAEKGPAYCQRLWPGPLLPALLHTLAFSDTEVVGQSLELLHLL
        400       410       420       430       440       450      

              220       230       240       250   
pF1KB8 FLYQPEAVQVFLQQSGLQALERHQEEAQLQDRVYALQQTALQG
       :::::::::::::::::::::::::::::::::::::::::::
CCDS75 FLYQPEAVQVFLQQSGLQALERHQEEAQLQDRVYALQQTALQG
        460       470       480       490         




253 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:40:23 2016 done: Fri Nov  4 09:40:23 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]