FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8110, 180 aa
  1>>>pF1KB8110 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9593+/-0.000656; mu= 8.4091+/- 0.040
 mean_var=161.6912+/-32.751, 0's: 0 Z-trim(117.6): 10  B-trim: 155 in 2/52
 Lambda= 0.100863
 statistics sampled from 18417 (18427) to 18417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.566), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS196.2 NBL1 gene_id:4681|Hs108|chr1             ( 181) 1312 201.1 3.1e-52
CCDS72720.1 NBL1 gene_id:4681|Hs108|chr1           ( 215) 1312 201.1 3.5e-52
CCDS41278.1 NBL1 gene_id:4681|Hs108|chr1           ( 216) 1312 201.1 3.6e-52


>>CCDS196.2 NBL1 gene_id:4681|Hs108|chr1                  (181 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 1051.2  bits: 201.1 E(32554): 3.1e-52
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:2-181)

                10        20        30        40        50         
pF1KB8  MLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MMLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 GQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSC
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 QACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 QACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE
              130       140       150       160       170       180

     180
pF1KB8 D
       :
CCDS19 D
        

>>CCDS72720.1 NBL1 gene_id:4681|Hs108|chr1                (215 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 1050.2  bits: 201.1 E(32554): 3.5e-52
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:36-215)

                                             10        20        30
pF1KB8                               MLRVLVGAVLPAMLLAAPPPINKLALFPDK
                                     ::::::::::::::::::::::::::::::
CCDS72 LQQLISMDLFWRLFFVCGQEGLRALEATGMMLRVLVGAVLPAMLLAAPPPINKLALFPDK
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KB8 SAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSM
          70        80        90       100       110       120     

              100       110       120       130       140       150
pF1KB8 WEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQPGTHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQPGTHPH
         130       140       150       160       170       180     

              160       170       180
pF1KB8 PHPHPHPGGQTPEPEDPPGAPHTEEEGAED
       ::::::::::::::::::::::::::::::
CCDS72 PHPHPHPGGQTPEPEDPPGAPHTEEEGAED
         190       200       210     

>>CCDS41278.1 NBL1 gene_id:4681|Hs108|chr1                (216 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 1050.2  bits: 201.1 E(32554): 3.6e-52
Smith-Waterman score: 1312; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:37-216)

                                             10        20        30
pF1KB8                               MLRVLVGAVLPAMLLAAPPPINKLALFPDK
                                     ::::::::::::::::::::::::::::::
CCDS41 SQTSRAVSIWKFPAKLGKTHGHRALEATGMMLRVLVGAVLPAMLLAAPPPINKLALFPDK
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB8 SAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSM
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB8 WEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQPGTHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQPGTHPH
        130       140       150       160       170       180      

              160       170       180
pF1KB8 PHPHPHPGGQTPEPEDPPGAPHTEEEGAED
       ::::::::::::::::::::::::::::::
CCDS41 PHPHPHPGGQTPEPEDPPGAPHTEEEGAED
        190       200       210      




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:36:00 2016 done: Fri Nov  4 09:36:01 2016
 Total Scan time:  1.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]