FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8106, 177 aa
  1>>>pF1KB8106 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6966+/-0.00094; mu= 9.7303+/- 0.056
 mean_var=53.0904+/-10.330, 0's: 0 Z-trim(103.5): 26  B-trim: 0 in 0/51
 Lambda= 0.176022
 statistics sampled from 7422 (7439) to 7422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.229), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12         ( 177) 1113 290.6 3.4e-79
CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12        ( 185) 1081 282.5   1e-76
CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12        ( 154)  935 245.4 1.2e-65
CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12        ( 160)  920 241.6 1.8e-64
CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17        ( 210)  859 226.1 1.1e-59


>>CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12              (177 aa)
 initn: 1113 init1: 1113 opt: 1113  Z-score: 1535.2  bits: 290.6 E(32554): 3.4e-79
Smith-Waterman score: 1113; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR
              130       140       150       160       170       

>>CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12             (185 aa)
 initn: 1080 init1: 1080 opt: 1081  Z-score: 1490.9  bits: 282.5 E(32554): 1e-76
Smith-Waterman score: 1081; 97.2% identity (98.3% similar) in 177 aa overlap (1-177:9-185)

                       10        20        30        40        50  
pF1KB8         MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT
               : . . ::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MGGFRTEGMFVSLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB8 HRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 HRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB8 ALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIK
              130       140       150       160       170       180

            
pF1KB8 WSLLR
       :::::
CCDS61 WSLLR
            

>>CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12             (154 aa)
 initn: 954 init1: 935 opt: 935  Z-score: 1292.0  bits: 245.4 E(32554): 1.2e-65
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 148 aa overlap (30-177:7-154)

               10        20        30        40        50        60
pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
                                    :::::::::::::::::::::::::::::::
CCDS61                        MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
                                      10        20        30       

               70        80        90       100       110       120
pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
        40        50        60        70        80        90       

              130       140       150       160       170       
pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR
       100       110       120       130       140       150    

>>CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12             (160 aa)
 initn: 920 init1: 920 opt: 920  Z-score: 1271.1  bits: 241.6 E(32554): 1.8e-64
Smith-Waterman score: 965; 90.4% identity (90.4% similar) in 177 aa overlap (1-177:1-160)

               10        20        30        40        50        60
pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR
       ::::::::::::::::::::::::::                 ::::::::::::::
CCDS61 LFLAVDEIVDGGVILESDPQQVVHRV-----------------LQSAKEQIKWSLLR
              130       140                        150       160

>>CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17             (210 aa)
 initn: 873 init1: 859 opt: 859  Z-score: 1185.3  bits: 226.1 E(32554): 1.1e-59
Smith-Waterman score: 859; 74.9% identity (94.7% similar) in 171 aa overlap (7-177:40-210)

                                       10        20        30      
pF1KB8                         MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP
                                     ::::::.::..:::::: ::.:::::::.:
CCDS74 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP
      10        20        30        40        50        60         

         40        50        60        70        80        90      
pF1KB8 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC
       :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.:
CCDS74 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC
      70        80        90       100       110       120         

        100       110       120       130       140       150      
pF1KB8 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLT
       ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..:  ::
CCDS74 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT
     130       140       150       160       170       180         

        160       170       
pF1KB8 EQTVSQVLQSAKEQIKWSLLR
       ::.:.:::::::::::::::.
CCDS74 EQSVAQVLQSAKEQIKWSLLK
     190       200       210




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:32:34 2016 done: Fri Nov  4 09:32:34 2016
 Total Scan time:  1.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]